PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK06916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 405aa MW: 45892.8 Da PI: 6.4684 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.5e-12 | 220 | 266 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++ ++++ L++l+P++ +K++ a+++ A+eYI++L PK06916.1 220 TKHFASERHRRVQMSDKYHVLKSLVPNP-----TKNDRASVVGDAIEYIREL 266 78**************************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-12 | 217 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.51E-14 | 217 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.316 | 217 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 220 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.30E-9 | 220 | 270 | No hit | No description |
SMART | SM00353 | 2.1E-9 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
NSQEEAAINM ELQQQLAFNM DNSYNTDINT TAQLVSFDHL QHHNHHHHQQ QPQWDNEDMS 60 YNNNNHRHNQ HHQEPADLLS LFHLPRCSAT SSSSITFTNP TPPKTANFPN TSLAFLGDVP 120 MGTDSPPSSS ILYDPLLHLN LPPQPPLFKD LFQPLPNGYA FPSSSSRNGS LFSNGVMDMD 180 GEGSGGVYQD GLEGMQFESG VLEFARDRSY IDRGRDGRGT KHFASERHRR VQMSDKYHVL 240 KSLVPNPTKN DRASVVGDAI EYIRELRRTV NELKILVEKK RRGIEANKRR KSEEDTAGEV 300 ENCNIKPEPD HSYIRSSWLQ RKSKDTEVDV RIIDDEVTIK LVQRKKINLL LTASRVLDEL 360 QLDLRHVAGG HVGDTYSFLF NTKIYEGSSL YASAIANKLM DVLDX |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020413510.1 | 1e-158 | transcription factor bHLH10 | ||||
Refseq | XP_020413511.1 | 1e-158 | transcription factor bHLH10 | ||||
TrEMBL | A0A2P5C6N5 | 0.0 | A0A2P5C6N5_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010097712.1 | 1e-157 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-69 | bHLH family protein |