PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06349.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

CAMTA

Protein Properties

Length: 990aa MW: 109900 Da PI: 5.3692

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06349.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	175.7	6.1e-55	15	129	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+Lyn++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+eenp+fqrr+yw+ PK06349.1 15 QEaQSRWLKPAEVLFILQNHEKYKLTQEPPKKPPSGSLLLYNKRILRFFRRDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEENPSFQRRSYWI 114 5669********************************************************************************************** PP CG-1 102 Leeelekivlvhyle 116 L+ ++e+ivlvhy++ PK06349.1 115 LDPAYEHIVLVHYRD 129 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.654	10	136	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.4E-75	13	131	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-47	16	129	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.6E-10	423	511	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.9E-19	428	511	IPR014756	Immunoglobulin E-set
Pfam	PF01833	5.3E-12	428	511	IPR002909	IPT domain
CDD	cd00102	1.44E-6	428	511	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.8E-15	623	718	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.884	624	718	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.71E-16	628	718	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.60E-13	629	716	No hit	No description
Pfam	PF12796	5.4E-8	639	718	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.22	657	689	IPR002110	Ankyrin repeat
SMART	SM00248	5.2E-4	657	686	IPR002110	Ankyrin repeat
SMART	SM00248	1700	696	725	IPR002110	Ankyrin repeat
SMART	SM00015	13	774	796	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.675	775	804	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	9.29E-8	781	880	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.5	828	850	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.84	829	858	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.021	831	849	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0016	851	873	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.846	852	876	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.7E-4	854	873	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MKAMQSGYDI NDLFQEAQSR WLKPAEVLFI LQNHEKYKLT QEPPKKPPSG SLLLYNKRIL 60 RFFRRDGHNW RKKKDGRTVG EAHERLKVGN VETLNCYYAH GEENPSFQRR SYWILDPAYE 120 HIVLVHYRDI TEGNSSSRSG SGSGSGSGSA TQLSPESFLS FSQSPSPSNT QNAGSLFVSD 180 YQSYSPGSIE VTSDSVIQSN GNGHYDSIDG TGGILSTTQG DVNQALRKLE VQLSLNEDSV 240 KDFESPSKLE DPNDPDLLEY ENQMYNPNTF LDFNEPGNLA VDQCYSGFDG VPGDSGGDHH 300 QLLEHEHRYG GKESVSWKEM LDSCNISSGV ECQNNHALLN GTHVEYTRNG PTEEQEYLQW 360 QKSSSSIVDN ASSVMCQEVD HLKISSYPSS SKVLDTNSEY YAMLFDQGQT GPLESGVSLT 420 TEQKQKFTIH EISPEWGYAT EATKIIIVGS FLCDSSESTW HCMFGDVEVP AQIIQDGVLR 480 CEAPPHPSGK VTICITAGNR QSCSEVKEFE YCLKPSSCAQ GNPPLTESTR SPEELLLLVR 540 FVQLLLSDSS MPRRDNKVLD APQKLIADVD SWDSLIESLL DGSGTLSSTI NLILEELLKD 600 KLLQWISSRS QEQQDQTGCP LSKKEQGIIH MIAGLGFEWA INPILSSGVS INFRDINGWT 660 ALHWAARFGR EKMVAALIAS GASAGAVTDP CSQDPIGKTA ASIAASNGHK GLAGYLAEVA 720 LTSHLSSLTL EESELYKGSA EIEAENTINS ISKHGLIAHE DQLSLEPTLA AVRNAAQAAA 780 RIQSAFRAHS FRKQQKEAID SNINEDEYGF SLNDISAMSK MKFRNPRDYN SAALSIQKKY 840 RGWKGRKDFL ALRQKVVKIQ AHVRGYQIRK SYKVICWAVG VLEKVVLRWR RKGSGLRGYR 900 PEIDPIDESE DILKVFRKQK VDGTIKEAFS RVMSMVKSSE ARQQYIRVFE KYCQVKAERG 960 DEDIEAAAAA ASSELADLYG LEDVDMFSFP

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MKAMQSGYDI NDLFQEAQSR WLKPAEVLFI LQNHEKYKLT QEPPKKPPSG SLLLYNKRIL  60
RFFRRDGHNW RKKKDGRTVG EAHERLKVGN VETLNCYYAH GEENPSFQRR SYWILDPAYE  120
HIVLVHYRDI TEGNSSSRSG SGSGSGSGSA TQLSPESFLS FSQSPSPSNT QNAGSLFVSD  180
YQSYSPGSIE VTSDSVIQSN GNGHYDSIDG TGGILSTTQG DVNQALRKLE VQLSLNEDSV  240
KDFESPSKLE DPNDPDLLEY ENQMYNPNTF LDFNEPGNLA VDQCYSGFDG VPGDSGGDHH  300
QLLEHEHRYG GKESVSWKEM LDSCNISSGV ECQNNHALLN GTHVEYTRNG PTEEQEYLQW  360
QKSSSSIVDN ASSVMCQEVD HLKISSYPSS SKVLDTNSEY YAMLFDQGQT GPLESGVSLT  420
TEQKQKFTIH EISPEWGYAT EATKIIIVGS FLCDSSESTW HCMFGDVEVP AQIIQDGVLR  480
CEAPPHPSGK VTICITAGNR QSCSEVKEFE YCLKPSSCAQ GNPPLTESTR SPEELLLLVR  540
FVQLLLSDSS MPRRDNKVLD APQKLIADVD SWDSLIESLL DGSGTLSSTI NLILEELLKD  600
KLLQWISSRS QEQQDQTGCP LSKKEQGIIH MIAGLGFEWA INPILSSGVS INFRDINGWT  660
ALHWAARFGR EKMVAALIAS GASAGAVTDP CSQDPIGKTA ASIAASNGHK GLAGYLAEVA  720
LTSHLSSLTL EESELYKGSA EIEAENTINS ISKHGLIAHE DQLSLEPTLA AVRNAAQAAA  780
RIQSAFRAHS FRKQQKEAID SNINEDEYGF SLNDISAMSK MKFRNPRDYN SAALSIQKKY  840
RGWKGRKDFL ALRQKVVKIQ AHVRGYQIRK SYKVICWAVG VLEKVVLRWR RKGSGLRGYR  900
PEIDPIDESE DILKVFRKQK VDGTIKEAFS RVMSMVKSSE ARQQYIRVFE KYCQVKAERG  960
DEDIEAAAAA ASSELADLYG LEDVDMFSFP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017619.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2P5C1S1	0.0	A0A2P5C1S1_TREOI; Serine/threonine protein kinase
STRING	XP_008222185.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]