PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06282.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 308aa MW: 35052.8 Da PI: 7.673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06282.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	46	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ PK06282.1 46 FYDEYARQVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 134 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-24	46	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDSDEGAEAV ESCGVQEQEL GTYEGDGIVE PYEGMAFDSE DAAKIFYDEY ARQVGFVMRV 60 MSCRRSERDG RILARRLGCN KEGHCVSIRG KFGPVRKPRP STREGCKAMI HVKYDKSGKW 120 VITKFVKDHN HPLVFSPREA RQTMDEKDKK IQELTAELRN KKRLCTTYQE QLTAFIKIVE 180 EHSDQLSKKV QNVVSNLKEF ESVDQDLLHH RXSSIFYWAW IFNDVSVRSK DVKLERIGVV 240 QVMLIVNLSM QVQEKKDCGC RQAEAQAIVC CVHADAGIDS SHRRDVSDGQ LLLAALTTCK 300 KAQLELGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222477.1	1e-134	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016648093.1	1e-134	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020409810.1	1e-134	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020409811.1	1e-134	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021833156.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P5ESY1	1e-135	A0A2P5ESY1_TREOI; Uncharacterized protein (Fragment)
STRING	XP_008222477.1	1e-134	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-111	FAR1 family protein