PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05451.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 714aa    MW: 77368 Da    PI: 7.2815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05451.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16452498455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  PK05451.1 452 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 498
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.48E-17444502No hitNo description
SuperFamilySSF474591.44E-20445509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-20445506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13452498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPLSELYRLA RRRVDTTQDF PPPNDVFELV WENGQISTQG QSTRTRKDPT SHYLPSYTQK  60
SRDKDVGNRT TCKTGKFGTV DAVLNEIPMS VPSDEVGLSH DDDMMPWLNY PIDGSLQHEY  120
CPDMLPELSG VTVNDISKSN NFVSNDKSSC NLLYRDSNAS SVGYGSSLDQ RQGSKVGANI  180
LRSKTGTTQL YQSSSSQDCQ TSFPSFRSRG VDAIADNTSS AARHCVCGDS ALIPSPGSFP  240
SQKMQKKDPI PPTNSSNVVN FSHFSRPVAL VKTNHKNTND SNAPNMESLP NKDNGSAANS  300
TSPPKPTLID SSSSLRKETS THCQKMASGI DLKLSEARPL EEPCAAKDTE AVSLEDASKN  360
DLNFSQIPCE SATRAPQNGE KATEPVVASS SVCSGNSVER ASDDPTHVLK RKFRDTEDSE  420
CHSDDVDEES VGVKKTAHTR GSGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK  480
VDKASMLDEA IEYLKTLQLQ VQIMSMGAGL CMPPMMLPPG MQHMHASHMA HFSPMSIGMG  540
MSMGMGYGVS MPDMNGGSSG YPMIQVPPMH AAHYPGPPIP GHSAGMHGMT GPNLQVFGLP  600
GQGISMPMQR APLVPMMGGT FMKPSMGLNA SGVGGSVENM ESARPYTSKD PVQDTTTQVV  660
QSNGAGGSTI RHLLSVNPQM RGSNRLLWCR AMFKYQMSMA AKFPTLLTIN EVGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456461ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020429.10.0transcription factor PIF3
TrEMBLA0A2P5DRB80.0A0A2P5DRB8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010094912.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-68phytochrome interacting factor 3