PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 714aa MW: 77368 Da PI: 7.2815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 452 | 498 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq PK05451.1 452 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 498 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.48E-17 | 444 | 502 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-20 | 445 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-20 | 445 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 448 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 452 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 454 | 503 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MPLSELYRLA RRRVDTTQDF PPPNDVFELV WENGQISTQG QSTRTRKDPT SHYLPSYTQK 60 SRDKDVGNRT TCKTGKFGTV DAVLNEIPMS VPSDEVGLSH DDDMMPWLNY PIDGSLQHEY 120 CPDMLPELSG VTVNDISKSN NFVSNDKSSC NLLYRDSNAS SVGYGSSLDQ RQGSKVGANI 180 LRSKTGTTQL YQSSSSQDCQ TSFPSFRSRG VDAIADNTSS AARHCVCGDS ALIPSPGSFP 240 SQKMQKKDPI PPTNSSNVVN FSHFSRPVAL VKTNHKNTND SNAPNMESLP NKDNGSAANS 300 TSPPKPTLID SSSSLRKETS THCQKMASGI DLKLSEARPL EEPCAAKDTE AVSLEDASKN 360 DLNFSQIPCE SATRAPQNGE KATEPVVASS SVCSGNSVER ASDDPTHVLK RKFRDTEDSE 420 CHSDDVDEES VGVKKTAHTR GSGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK 480 VDKASMLDEA IEYLKTLQLQ VQIMSMGAGL CMPPMMLPPG MQHMHASHMA HFSPMSIGMG 540 MSMGMGYGVS MPDMNGGSSG YPMIQVPPMH AAHYPGPPIP GHSAGMHGMT GPNLQVFGLP 600 GQGISMPMQR APLVPMMGGT FMKPSMGLNA SGVGGSVENM ESARPYTSKD PVQDTTTQVV 660 QSNGAGGSTI RHLLSVNPQM RGSNRLLWCR AMFKYQMSMA AKFPTLLTIN EVGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 456 | 461 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024020429.1 | 0.0 | transcription factor PIF3 | ||||
TrEMBL | A0A2P5DRB8 | 0.0 | A0A2P5DRB8_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010094912.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-68 | phytochrome interacting factor 3 |