PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK05303.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 481aa    MW: 51106.4 Da    PI: 8.6675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK05303.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-115480127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++ ++C +++rtG+C yG+rC+++H++
  PK05303.4 54 PGVPNCVYYMRTGYCGYGNRCRYNHPR 80
               5789*********************96 PP
2zf-CCCH40.93.4e-13101125327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++++tGtCk+G++CkF+H++
  PK05303.4 101 EPICQYYLKTGTCKFGASCKFHHPK 125
                799********************96 PP
3zf-CCCH38.32.2e-12145171127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG+Ck+G +CkF+H++
  PK05303.4 145 PGEAECSYYLKTGQCKFGLTCKFHHPQ 171
                5789*********************97 PP
4zf-CCCH36.39.6e-12302328127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG Ck+G++C+++H++
  PK05303.4 302 PGEPECQYYLKTGDCKFGSSCRYHHPR 328
                5799*********************96 PP
5zf-CCCH35.51.7e-11349373226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++ +C f++++G+Ck+G++CkF H+
  PK05303.4 349 GMQPCTFYLQNGHCKFGATCKFDHP 373
                7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-65380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.085381IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-95580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-75782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-55980IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-798125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86398126IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5103125IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549144172IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4150170IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835301329IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6306329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5307329IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666347375IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9349373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6349378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5351372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPGHQPE WTPDGGETGL EESMWQLGLT GAGDGGGESY PERPGVPNCV  60
YYMRTGYCGY GNRCRYNHPR DRAAVAAAVR ATGEYPERVG EPICQYYLKT GTCKFGASCK  120
FHHPKHGGGS LSQAPLNVYG YPLRPGEAEC SYYLKTGQCK FGLTCKFHHP QPAGTSVTAS  180
APQFYPPVQS PSVPMPDQFG GPSTSLRVAR PPLVPGSYVQ GTYGPVLFPH GVVPLPGWNP  240
YSAPVSPVLS PGAQPTVGGA SVYGVTHLPS STASVARPYS SLPSSIGASS SSPKEQAFPE  300
RPGEPECQYY LKTGDCKFGS SCRYHHPRDR AVPRTNCLLS PVGLPLRPGM QPCTFYLQNG  360
HCKFGATCKF DHPLGTMRYS PSASSLIDMP VTPYPVGSLL ATLAPSSTSS ELRPELIPGS  420
KMESFSARMP SSGNTSTSSV GLIFSQTGPV SLSDVQLSSQ SSVALSSSRS TRQGGEVRRS  480
S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112757.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_024032024.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY60.0W9SLY6_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein