PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK03600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 220aa MW: 24963.3 Da PI: 9.3141 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.3e-10 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k Cr+f+r G C+yG rCkF H+ PK03600.1 4 KKDVCRNFQR-GSCQYGQRCKFLHV 27 6679******.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.563 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MPVKKDVCRN FQRGSCQYGQ RCKFLHVTSS QQQQRPNNVF SYQQQQQQQK PSNPYGFGVQ 60 NNPQPKGAGD FGSKPNQHKP FQNSWTRSSS TPNANNTSES QSQTTNHKCT DRESCRRVAV 120 EDFQHERPLW RLTCYGHWKN APCDIVGDIS YEELRMAAYD DAKRGLSLQT IVDRERNLVN 180 SKVIEFENLC KSGPVPRNST PANQTFPGTA PNAFAQSAQX |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869714.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Refseq | XP_015869720.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Refseq | XP_015870020.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Refseq | XP_015870074.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Refseq | XP_015870079.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Refseq | XP_015870084.1 | 6e-99 | zinc finger CCCH domain-containing protein 16-like isoform X3 | ||||
Swissprot | Q9FWS3 | 2e-68 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A2P5FR77 | 1e-121 | A0A2P5FR77_TREOI; Zinc finger, CCCH-type | ||||
STRING | XP_008380621.1 | 2e-87 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75340.1 | 2e-70 | C3H family protein |