PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03169.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 311aa MW: 33956.1 Da PI: 7.8483

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03169.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.8	2.7e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e++ PK03169.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAV 103 6*************************************************************************************************99 PP DUF260 96 llke 99 l ++ PK03169.1 104 LKGS 107 8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.7E-96	1	309	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.352	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGSPIT PITSEAAVSS 120 HGPPLKAYDI RHVSKDENSA ASNDPTNQQR STKTRCRFKR NVVKPKARKA TEFEVEGTRC 180 DTTQSKWATY CADDQVNRST SHDSSVSHQS DPAPNVDGDS KETETSMVSV ETAEVSLLFR 240 ADTESATKPG NDATRDNEPA LELTLGFEPA SHARRHVVPV KKRRIETTGS DGCTTSDDGA 300 CKIELGLEYP A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103788.1	1e-166	LOB domain-containing protein 40
Swissprot	Q9M886	1e-101	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2P5DY66	0.0	A0A2P5DY66_PARAD; LOB domain-containing protein
STRING	XP_010103788.1	1e-165	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-94	LOB domain-containing protein 41