PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02366.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23183.7 Da PI: 9.8828 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.3 | 1e-55 | 15 | 160 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdee++++yL++kv ++++ + ++i+++d++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k PK02366.4 15 LPPGFRFHPTDEEIITYYLTEKVLNTNFIA-SAIADADLNKCEPWDLPKRAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYNKgnI-- 111 79*************************877.78***************99999*****************************************9650.. PP NAM 99 l..................vglkktLvfykgrapkgektdWvmheyrle 129 + vg+kktLvfykgrapkgek++Wvmheyrle PK02366.4 112 KnsllssssssssssstnlVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160 3455566666667777777****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-62 | 12 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.874 | 15 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-30 | 16 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XSSSSDHNHN HLIDLPPGFR FHPTDEEIIT YYLTEKVLNT NFIASAIADA DLNKCEPWDL 60 PKRAKMGEKE WYFFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYNKGN IKNSLLSSSS 120 SSSSSSSTNL VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GKFSYYNLPK SAKDEWVVCR 180 VFHKNIGNNN NNIQKKIMNP X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 13 | 185 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 13 | 185 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 13 | 185 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 13 | 185 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 13 | 185 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 13 | 185 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 13 | 185 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088484.1 | 1e-108 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 6e-99 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | W9QN11 | 1e-106 | W9QN11_9ROSA; NAC domain-containing protein 100 | ||||
STRING | XP_010088484.1 | 1e-107 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 2e-97 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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