PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK01032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 28495.1 Da PI: 6.3944 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.9 | 4.5e-56 | 72 | 176 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+p PK01032.1 72 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 171 89******988889************************************************************************************** PP NF-YC 98 rdelk 102 rdelk PK01032.1 172 RDELK 176 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.61E-34 | 53 | 166 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-37 | 86 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-21 | 94 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
XQPVVGMVTG SGQMSYGPSS YQTAPMVASG APAVAVPSPT QPPANFSNSS HQLAFQQAQH 60 FHHQQQQQQQ QQLQMFWANQ MQEIEQTTDF KNHSLPLARI KKIMKADEDV RMISAEAPVI 120 FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII PRDELKEEGL 180 GVPKATLPVV GSPADMPYYY VPQQHPAGPT GMIMGKPVDQ AAMYAAQQPR PPMAFVPWPQ 240 TQPQQQQQQQ PQTDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-59 | 80 | 172 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 150 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882049.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882050.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882052.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882054.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_024929310.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_024929311.1 | 1e-143 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-82 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2P5CB24 | 1e-146 | A0A2P5CB24_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | EMJ12984 | 1e-139 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-82 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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