PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01087379G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 331aa MW: 36416.3 Da PI: 8.3404 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.5e-25 | 69 | 112 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e PH01087379G0010 69 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 112 79***************************************998 PP | |||||||
2 | QLQ | 48.8 | 2.1e-17 | 1 | 32 | 6 | 37 |
QLQ 6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Q+q+L++Q+l+yKy+a++ P+P++L++++++ PH01087379G0010 1 SQWQELEHQALIYKYMASGTPIPSDLILPLRR 32 6****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08880 | 5.2E-12 | 1 | 30 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.1 | 1 | 32 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
SMART | SM00951 | 2.2E-4 | 1 | 32 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 69 | 113 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-20 | 70 | 112 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
SQWQELEHQA LIYKYMASGT PIPSDLILPL RRSFLLDSAL ATSPSLAFPP QPSLGWGYFS 60 MGFGRKTEDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP VEMSLATPPP 120 SSSASSSSNA SAVNAATTTS SPAPSYHRPA AAAHDVTPYH ALYGGPYAAS ARPPGAGAFH 180 AQVSPFHLHL DTTHPHPPPS YYSMDHKDYA YGHSAKEVHG EHAFFSDSTE RDHHAGHGQW 240 QFKQLGMEPK QSATSFFPGG GYGNSAASPY PIDLSKEEDE EKERRQQQHC FVLGADLRLE 300 KPAGHDAAAG AAQKPLRHFF NEWPHEKGSK G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01087379G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF201895 | 0.0 | AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647996.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | Q6AWY8 | 1e-177 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | J3LHM0 | 1e-179 | J3LHM0_ORYBR; Uncharacterized protein | ||||
STRING | OB02G41370.1 | 1e-180 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-48 | growth-regulating factor 5 |