PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01007980G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25423 Da PI: 8.0016 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 87 | 132 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e Er+RRd+ + f Lr +P+ ++++Ka+ L A YI +L PH01007980G0020 87 SHVETERQRRDKHKRLFCDLRAAVPTV-----TRMDKASLLADAAAYIVEL 132 799***********************8.....7***************777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-14 | 76 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.57 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-7 | 87 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-7 | 87 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-13 | 87 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-6 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDELLLSFSS SRSPVDAFFS AAGHRPVLEF MSCDVPEEWP LADNSAWAVG STLWAGSDMS 60 TQGNAPAPAG KRRGRKPGPR SEGTAISHVE TERQRRDKHK RLFCDLRAAV PTVTRMDKAS 120 LLADAAAYIV ELRGRVERLE AEAKQAAALA GPSKLEEKLD VRMVGREAAA VRLTTAAQHA 180 PARLMVTLRA LDLPVQHACV SRVGAVTVQN VVVDVPAALQ EEGCLRAALL HSLQES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_B | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_E | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_F | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_G | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_I | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_M | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
5gnj_N | 4e-15 | 86 | 156 | 7 | 77 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 100 | QRRDKHKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01007980G0020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097341 | 1e-122 | FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974086.2 | 2e-91 | transcription factor MYC2 | ||||
TrEMBL | A0A368RQ19 | 3e-90 | A0A368RQ19_SETIT; Uncharacterized protein | ||||
STRING | Si015513m | 6e-91 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 4e-21 | bHLH family protein |