PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007575G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 538aa    MW: 58470.2 Da    PI: 5.2007
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007575G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.4e-39159218261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  PH01007575G0040 159 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 218
                      7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31156216IPR003851Zinc finger, Dof-type
PfamPF027014.5E-32161217IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891163217IPR003851Zinc finger, Dof-type
PROSITE patternPS013610165201IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSDQKDPGLK LFGRVIPLVP EAAPGPPEAE ATAGPDQPPT PPPELQPPVP ADAELEADKD  60
QHKETEDKED NEMKVDVPQE KENSEMMVDA PREKEDNMKV DAPQAKENAE QDSSSTSDHK  120
KEDQDQISNA EDKAASDSKE ENGKTANDES GQDKILKKPD KILPCPRCNS MDTKFCYYNN  180
YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKSKNSSL HYRHLLMAPD CMMGSRVDIS  240
KTVIPEALAS SRSIPIQPIS RNETVLKFGP EVPLCASMAS ALNIEEQNVT NVGSVPRIEN  300
REDNSCASSI TSYNGLPENA VHTDKDETPV YCNGVGPVPR YYLGAPFMYP WSIGWNNLPV  360
TVPGRGMPES ASPSESCSPS SAPWMNSPMM QASRFSAPAF PYPLVPPALW GCLSSWPATA  420
WSRTNGCITP SSSSNSSCSG NGSPTLGKHS RDSNPLKEEK KEKSLWVPKT LRIDDPDEAA  480
KSSIWATLGI KPGDPGIFKP FQSKGKSKGQ TSDAHPALVL QANPAASSRS QLFQESS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007575G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565622.20.0cyclic dof factor 2
TrEMBLA0A0D9UZC00.0A0A0D9UZC0_9ORYZ; Uncharacterized protein
STRINGLPERR01G09720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-71cycling DOF factor 2