PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005961G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | WRKY | ||||||||
Protein Properties | Length: 176aa MW: 20364.6 Da PI: 9.3357 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.6 | 6e-34 | 94 | 152 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d++vv++tYeg+H+h+ PH01005961G0010 94 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSKDESVVVTTYEGTHTHP 152 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-34 | 79 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-30 | 86 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.93 | 89 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-40 | 94 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-28 | 95 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEAYPMLFAT QPFCEPNSNF FDNFITSQGH ALQDNSISSG FFRESKEVMS SSKDGDATPQ 60 GHGERSDMLG KNRGVKKERR PRYAFQTRSH VDVLDDGYRW RKYGQKAVKN NNFPRSYYRC 120 THQGCNVKKQ VQRLSKDESV VVTTYEGTHT HPIERASDNF EHILNQVQIY TSGRFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-27 | 84 | 153 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-27 | 84 | 153 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005961G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101056 | 0.0 | FP101056.1 Phyllostachys edulis cDNA clone: bphyem003b02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979296.1 | 2e-68 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 4e-52 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | K3ZJV4 | 4e-67 | K3ZJV4_SETIT; Uncharacterized protein | ||||
STRING | Si026859m | 6e-68 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 2e-54 | WRKY DNA-binding protein 75 |