PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004739G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13310.7 Da PI: 10.2623 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.9e-16 | 23 | 100 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f++e+ +++sk+l+l d++g+ Wev++ y ++ +++GW++F+ n+L+ D+++F+l ++ + +v+++r PH01004739G0010 23 KIPSGFVRECL--PRTSKKLILWDPQGKAWEVNYVYYSDRCVGSFSGGWSKFALGNNLEKYDVCIFELF--MKDNIKVHIYR 100 59999***996..46789****************997777777899*********************75..45566888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.4E-6 | 14 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-14 | 23 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-20 | 23 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-19 | 23 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.857 | 24 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.92E-19 | 24 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MPIASAQSHP LHRLRRLIAL PKKIPSGFVR ECLPRTSKKL ILWDPQGKAW EVNYVYYSDR 60 CVGSFSGGWS KFALGNNLEK YDVCIFELFM KDNIKVHIYR VVPEITPYLP GSRKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004739G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576206.1 | 2e-49 | B3 domain-containing protein Os11g0197600 isoform X1 | ||||
Refseq | XP_010237857.1 | 3e-49 | B3 domain-containing protein Os11g0197600 isoform X2 | ||||
Swissprot | Q2R9D2 | 4e-49 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A0E0MDJ1 | 2e-48 | A0A0E0MDJ1_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A2K2CPR2 | 6e-48 | A0A2K2CPR2_BRADI; Uncharacterized protein | ||||
TrEMBL | I1IMS6 | 6e-48 | I1IMS6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G23270.1 | 1e-48 | (Brachypodium distachyon) | ||||
STRING | OPUNC11G05820.1 | 3e-49 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-08 | B3 family protein |
Publications ? help Back to Top | |||
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