PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004440G0090

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 398aa MW: 42595.1 Da PI: 5.9467

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004440G0090	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.0003	235	252	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 ++Ka+iL Av+Y+k+Lq PH01004440G0090 235 MDKATILSDAVRYLKELQ 252 79***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-5	224	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00222	234	256	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.7E-6	234	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDDSSLFMQW AMNTLQHQHP PAVSAYADGG DTFPSLQTLR NTASQNGMAP TETAAQDGHR 60 ATDSCSPGDT DSGGGKTSTP AAVMEHDGWS PSPNSVKCAP SSSSGSTNYR PVSWNFTSAL 120 AQPSNEATPN PGTTSTRAQD GGGVSELAYG SPPSRRAEES LREERLQHWA HLDGAVRSGS 180 HHGGAEAPGE DQPALHRALR CHPWPQEGPQ NPHSSCTLLT QFCTICQRIG QFAQMDKATI 240 LSDAVRYLKE LQTKLRALED HNGRSIESVV LVKKPCIAAP EDDDGCPTSS SAAAEPGFAA 300 GTAGTTRNAL PEIEARISES NVMVRIHCEN AKGVLVRLLA EVEGLHLSIT HTNALSFPAC 360 TVIITIVAKA SLIYFFHRYF FRDDVLRAFF SREGEDN*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDDSSLFMQW AMNTLQHQHP PAVSAYADGG DTFPSLQTLR NTASQNGMAP TETAAQDGHR  60
ATDSCSPGDT DSGGGKTSTP AAVMEHDGWS PSPNSVKCAP SSSSGSTNYR PVSWNFTSAL  120
AQPSNEATPN PGTTSTRAQD GGGVSELAYG SPPSRRAEES LREERLQHWA HLDGAVRSGS  180
HHGGAEAPGE DQPALHRALR CHPWPQEGPQ NPHSSCTLLT QFCTICQRIG QFAQMDKATI  240
LSDAVRYLKE LQTKLRALED HNGRSIESVV LVKKPCIAAP EDDDGCPTSS SAAAEPGFAA  300
GTAGTTRNAL PEIEARISES NVMVRIHCEN AKGVLVRLLA EVEGLHLSIT HTNALSFPAC  360
TVIITIVAKA SLIYFFHRYF FRDDVLRAFF SREGEDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004440G0090

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175438.1	4e-96	transcription factor NAI1-like
TrEMBL	A0A446RPU8	1e-100	A0A446RPU8_TRITD; Uncharacterized protein
STRING	OPUNC03G26600.1	4e-92	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	8e-21	bHLH family protein