PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004096G0180

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SBP

Protein Properties

Length: 1072aa MW: 118661 Da PI: 6.5635

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004096G0180	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.9	7.2e-15	43	73	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh lsefDe+krsCrrrLa+hn+rrrk+q+ PH01004096G0180 43 PFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 73 6***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.614	1	71	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.9E-11	42	74	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-8	43	70	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.72E-6	723	789	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-5	726	789	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-5	895	955	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.72E-6	895	960	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MQREVGPQLA PPLFMHQIQP LHPHAAAEKK RGHPWPAGAA VAPFHPLSEF DEGKRSCRRR 60 LAGHNRRRRK TQPTDVASQL LLPGNQENAA SRTQDIVNLI TVIARLQGSN VGKLPSVPPI 120 PDKDNLVQII SKINSMNNAN SVAKSPPSEV VDLNASHGQQ EDSVQKTTNG IDKQTVPTMD 180 LLAVLSTALA ASTPETNTSQ SQGSSDSSGN NKSKSHSTEP ASVVNSHEKS IRVFAAAGMI 240 RSNSTQESPP EIYKQSDREP YLSLQLFGST EEDIPPKMDT ANKYLSSESS NPLDEISPSS 300 SPPITHKFFP IRSVAEDIRH PHIADYGEDA GTVEVSTSRA WCAPPLELSK DSERPIENGS 360 PPNPAYQSCY ASTSCSEHSP STSNSDGQDR TGRIIFKLFG KEPGTVPGNL RDEIVNWLKH 420 SPSEMEGYIR PGCLVLSMYL SMPAIAWDEL EENLLQRVNT LVQSSDLDFW RKGRFLVRTD 480 TQLVSYKDGM TRLSKSWRTW NTPELTFVSP IAVVGGRKTS LVLKGRNLTI PGTQIHCTST 540 GKYISKEVLC SAYPGTIYDD SGVETFDLPG EPHLIIGRCF IEVENRFRGN SFPVIVANSS 600 VCEELRNLEA ELEDSQFFDV SSDDQVHDAR RLKPRDHVLH FLNELGWLFQ KAAACTPSTK 660 SDISDSDLIQ FSTARFKYLL LFSNERDWCS LTKALLDILA KRSLVSDELS QETLEMLSEI 720 HLLNRAVKRK SSRMVHLLVQ FVVICPDNSR LYPFLPNLPG PGGLTPLHLA ASIDDAEDIV 780 DALTDDPQQK AAACTPSTKS DISDSDLIQF STARFKYLLL FSNERDWCSL SKTLLDILAK 840 RSLVSDELSQ ETLEMLSEIH LLNRAVKRRS SRMVHSLVQF VVICPDNSRL YPFLPNLPGP 900 GGLTPLHLAA SIDDAEDIVD ALTDDPQQIG LICWHSVLDD NGQSPETYAK LRNNHSYNEL 960 VAQKLVDRKN SQVTIMVNKE EIRVDAGNVG ENNTSGIQAL QIRSCSQCAT LESGRLLRRP 1020 LHSRGLLARP YIHSMLAIAA VCVCVCVFMR ALLRFNSGRS FKWDRLHFGT I*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MQREVGPQLA PPLFMHQIQP LHPHAAAEKK RGHPWPAGAA VAPFHPLSEF DEGKRSCRRR  60
LAGHNRRRRK TQPTDVASQL LLPGNQENAA SRTQDIVNLI TVIARLQGSN VGKLPSVPPI  120
PDKDNLVQII SKINSMNNAN SVAKSPPSEV VDLNASHGQQ EDSVQKTTNG IDKQTVPTMD  180
LLAVLSTALA ASTPETNTSQ SQGSSDSSGN NKSKSHSTEP ASVVNSHEKS IRVFAAAGMI  240
RSNSTQESPP EIYKQSDREP YLSLQLFGST EEDIPPKMDT ANKYLSSESS NPLDEISPSS  300
SPPITHKFFP IRSVAEDIRH PHIADYGEDA GTVEVSTSRA WCAPPLELSK DSERPIENGS  360
PPNPAYQSCY ASTSCSEHSP STSNSDGQDR TGRIIFKLFG KEPGTVPGNL RDEIVNWLKH  420
SPSEMEGYIR PGCLVLSMYL SMPAIAWDEL EENLLQRVNT LVQSSDLDFW RKGRFLVRTD  480
TQLVSYKDGM TRLSKSWRTW NTPELTFVSP IAVVGGRKTS LVLKGRNLTI PGTQIHCTST  540
GKYISKEVLC SAYPGTIYDD SGVETFDLPG EPHLIIGRCF IEVENRFRGN SFPVIVANSS  600
VCEELRNLEA ELEDSQFFDV SSDDQVHDAR RLKPRDHVLH FLNELGWLFQ KAAACTPSTK  660
SDISDSDLIQ FSTARFKYLL LFSNERDWCS LTKALLDILA KRSLVSDELS QETLEMLSEI  720
HLLNRAVKRK SSRMVHLLVQ FVVICPDNSR LYPFLPNLPG PGGLTPLHLA ASIDDAEDIV  780
DALTDDPQQK AAACTPSTKS DISDSDLIQF STARFKYLLL FSNERDWCSL SKTLLDILAK  840
RSLVSDELSQ ETLEMLSEIH LLNRAVKRRS SRMVHSLVQF VVICPDNSRL YPFLPNLPGP  900
GGLTPLHLAA SIDDAEDIVD ALTDDPQQIG LICWHSVLDD NGQSPETYAK LRNNHSYNEL  960
VAQKLVDRKN SQVTIMVNKE EIRVDAGNVG ENNTSGIQAL QIRSCSQCAT LESGRLLRRP  1020
LHSRGLLARP YIHSMLAIAA VCVCVCVFMR ALLRFNSGRS FKWDRLHFGT I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	863	868	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004096G0180

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179484.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A3Q8B384	0.0	A0A3Q8B384_9POAL; Squamosa-promoter binding protein-like protein
STRING	MLOC_4792.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-154	squamosa promoter binding protein-like 14