PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004066G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 535aa    MW: 57215 Da    PI: 8.4975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004066G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11339382553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++ 
  PH01004066G0100 339 HMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMNL 382
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16332402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.612334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15337403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-5349383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MMDTLFVLGQ ESRLRILEQA AARVPGCAYL CVWAPIPGQP SSSSSAVAAT RCVPGWAYKD  60
GRAYMELPEH DLATSASLPV QQQFYQEAGI KMNKSWQMAA FMGCGSGEIE VGMSAAAAAN  120
GARMNLQATV EQVFSEEFFQ QSLLEELLQL PPTRPSSSSS SLPSFSVGSP ADGSTSLLRT  180
MAMSSATTSP RELTVAPLLH PRPPHPVPFG RHGHVHFPSA EADDAAMAQA MLAVISAASS  240
STLPTPSTPP PGIHRAQRWP RGGSTTAFRA YNAALAPRAP RRRPDAHGQR MIKMGISILS  300
RMHMIRCNRE RAAVATAQRG QEEEAATALS PPSSSQLHHM ISERRRRERL NESFEALRGL  360
LPPGSKKDKA TVLAKTLDYM NLLIAQISDL EAKNRSLEAQ IHQRINGGST RTGNEAQWLI  420
SGSPGRVQVQ VSSCADASTS SEPRREVTIR VVAPAECDLS ELVVRVIALL KEMGHFTLVS  480
VDARPPSSTS GIAHASLTLR ATARAGAGGF DEASLKEAVT KAVEDLVTPP PDEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342347ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004066G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617112e-51AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155039.10.0putative transcription factor bHLH041
TrEMBLA0A453NSI30.0A0A453NSI3_AEGTS; Uncharacterized protein
STRINGTraes_6AS_4D5775944.11e-162(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-23bHLH family protein