PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003916G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 359aa    MW: 40342.1 Da    PI: 5.4753
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003916G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34391312103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++ ++sw +  nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  PH01003916G0010  39 FLTKTYDMVDDPTTDAVVSWGAATNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRDLLK 123
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr+k +
  PH01003916G0010 124 NIKRRKPS 131
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3835128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-3535128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNHRMMNPVK VESRPSLGGA ANGPPRPMDG LTDAGPPPFL TKTYDMVDDP TTDAVVSWGA  60
ATNSFVVWDP HIFGTVLLPR YFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQRD  120
LLKNIKRRKP SHSSPNQQSP GSYLEVGHFG YDGEIDELKR DKQLLMTEVV KLRQEQQNTR  180
SDLQAMEERL QGTEQKHQQM MAFLARVMQN PEFIRQLISQ SEMRKELEDA ISKKRRRRID  240
QGHETVDSMD TSSSLEQGSQ VLLERQEPAD LLLNGVPSDL ESSSVETKGV EVQQGVASSS  300
SERAKGKPNG ELNDDFWEDL LHEGGIGDEA GNPAVHDDMN LLAQKMGYLN SNNMKPGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273413312125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127LKNIKRR
2232237KKRRRR
3233238KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003916G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650726.10.0PREDICTED: heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLJ3LTP30.0J3LTP3_ORYBR; Uncharacterized protein
STRINGOB03G44190.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]