PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003683G0160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 35494.1 Da PI: 8.1701 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48 | 2.6e-15 | 242 | 285 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++Nk+L+k+ PH01003683G0160 242 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNKELQKK 285 79*************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-11 | 238 | 301 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.105 | 240 | 285 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.5E-15 | 242 | 285 | No hit | No description |
SuperFamily | SSF57959 | 6.0E-11 | 242 | 285 | No hit | No description |
Pfam | PF00170 | 1.4E-12 | 242 | 285 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.74E-25 | 242 | 287 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 245 | 260 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDLKDGGVSE RRGAAPLARQ GSIYSLTFDE FQSTLGGMGD RLGKDFGSMN MDELLRSIWT 60 AEESQAMASA SASAAPEGEL QRQGSLTLPR TLSVKTVDEV WRDFVQEAPP GTVGGGGEAP 120 QPRWQPTLGE MTLEEFLAAN NSSIFFGNFG GANDAAGAGA MGFAPVGIGD PAMGNNGPMP 180 AVAGMGGGAV TVSPVDTAVA QLDSVDKGNA DLSSPMAPVP YPFEGVIRGR RSGGNVQKVV 240 ERRQRRMIKN RESAARSRAR KQAYTMELEA EVQKLKEQNK ELQKKQVYKF LVSSDRQIQI 300 NICPFCSIYP NTKLFMNTSK LQLFNRTLST * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003683G0160 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004457 | 1e-108 | AP004457.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0013B04. | |||
GenBank | AP014964 | 1e-108 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304807.1 | 1e-136 | bZIP transcription factor TRAB1 | ||||
Swissprot | Q6ZDF3 | 1e-127 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | A0A0E0LVU9 | 1e-144 | A0A0E0LVU9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G15700.1 | 1e-145 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.2 | 1e-30 | abscisic acid responsive element-binding factor 1 |
Publications ? help Back to Top | |||
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