PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003475G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 335aa    MW: 36302.4 Da    PI: 6.311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003475G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-1890137256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr       r+r +lg+f+tae+Aa a+++ + kl+ge
  PH01003475G0200  90 LYRGVRQRH-WGKWVAEIRP------RTRLWLGTFDTAEDAAMAYDREAFKLRGE 137
                      59******9.*********9......8**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.21E-3089146No hitNo description
PROSITE profilePS5103221.31190144IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2290145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-2990145IPR001471AP2/ERF domain
SMARTSM003803.5E-3590150IPR001471AP2/ERF domain
PRINTSPR003674.8E-1191102IPR001471AP2/ERF domain
PfamPF008471.2E-1191137IPR001471AP2/ERF domain
PRINTSPR003674.8E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0010200Biological Processresponse to chitin
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
PLLPQQLQQQ QQQTSLQHQQ MISFGNNQQQ QLGAPSLLFP PKFMPPEAQQ QMLLRYWSEA  60
LNLSPRGVRG GAVPPSLYQH LLRAPGPPKL YRGVRQRHWG KWVAEIRPRT RLWLGTFDTA  120
EDAAMAYDRE AFKLRGENAR LNFPDLFLGK GRAGGSGRTN ASAAASCSSS SSSAPPTPDE  180
ARTQQAQQQQ HREESSNTEP KPLLPAAEQE GIPEPEQNPH LQTADQQGGD GNTAMFQPPV  240
TSTGVWGPAD EAWFSAWGPG SSVWDYDIDS AHGLFLQSRF AGEHTGLDYV SSAPEVPLAL  300
APAPATGPVM ASAASSSPLP PPPPPHGPTF MWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1889144463ATERF1
3gcc_A3e-1889144463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003475G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953233.11e-139ethylene-responsive transcription factor ERF053
TrEMBLA0A0E0K2U21e-143A0A0E0K2U2_ORYPU; Uncharacterized protein
STRINGOPUNC02G23190.11e-144(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-33ERF family protein