PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003449G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 373aa    MW: 40435.4 Da    PI: 5.4078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003449G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-102172571055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  PH01003449G0170 217 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAMQYVKFLQ 257
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-13209269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-12216261No hitNo description
PfamPF000102.3E-7217257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MESSYSSAVP SMETDMMAQF LGGAHDHCFA YEQQDESVEA MAAMFLPSLD TDSNSSSSCL  60
NNDVSPQCWP QPCHSSSVTS FLDPAQSYES FEFPVMNPFP PTDFEPHCAI PYISEDLSPL  120
HGNHSSVGGE EATDDAPVTD KRKSSAVMMA SKKTKKAGKR DFIGNDEGGN TYVDTQSSSS  180
CTSEEGNLEG HAKSSSKKTS TRASRGAATD PQSLYARKRR ERINERLKIL QNLVPNGTKV  240
DISTMLEEAM QYVKFLQLQI KPTVKRRVPL NPPPRLPSTA PFRRTASAAP SNELKICLHH  300
ASSLFGFDDM QISPSFTAMS DIAATTPNSS LQTASPVVNV LLLALLFGLK DEVSRGNLPT  360
EVMSLTSIYV GI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003449G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.11e-136transcription factor bHLH54
TrEMBLA0A1E5UZQ71e-139A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRINGORUFI07G21430.11e-136(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.19e-31root hair defective 6-like 4