PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003426G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 158aa MW: 17074.8 Da PI: 6.6754 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 6.8e-11 | 124 | 156 | 3 | 35 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 e kr rr+ +NRe+ArrsR+RK a++ Le v PH01003426G0040 124 ETKRIRRMVSNRESARRSRRRKHAQLSDLESQV 156 679***************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 4.7E-9 | 124 | 156 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.76 | 124 | 158 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 126 | 156 | No hit | No description |
SuperFamily | SSF57959 | 2.93E-7 | 126 | 156 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 129 | 144 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MKKCPSELEL EAFIREDDAD AERKQHGHGA DAGVFSPGGL SGLGFGDSNT MGGSSASRLW 60 WSESVRTPHA AVSTSVESQT ACLSASPRAT TSAKHAPDSE SDSDSESLID VEGVPCERGT 120 KSMETKRIRR MVSNRESARR SRRRKHAQLS DLESQVLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003426G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100558 | 0.0 | FP100558.1 Phyllostachys edulis cDNA clone: bphyem211f06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951741.1 | 1e-43 | bZIP transcription factor RISBZ4 isoform X2 | ||||
Swissprot | Q6H500 | 8e-35 | RSBZ4_ORYSJ; bZIP transcription factor RISBZ4 | ||||
TrEMBL | A0A3L6RTE4 | 1e-43 | A0A3L6RTE4_PANMI; Basic leucine zipper 9-like isoform X1 | ||||
STRING | Pavir.Db00496.1.p | 4e-42 | (Panicum virgatum) | ||||
STRING | OPUNC02G10230.1 | 1e-41 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP57549 | 2 | 2 |
Publications ? help Back to Top | |||
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