PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003334G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 361aa    MW: 38514.1 Da    PI: 6.4024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003334G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08183230455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +  + ++Y++sLq
  PH01003334G0180 183 NHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKALMIDEIINYVQSLQ 230
                      79************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-9177234No hitNo description
PROSITE profilePS5088814.723179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDNDYVASLL MGSSSCAPGL DFGAPLLDGG FLETLCGGGV GFAERAARMS AGGGLYGVTG  60
VAAGNAELGG SREGSSVSDP AWAHARDANA RKRKAPAGAS TGKGKETFLS SSPCKVGQAK  120
GPDSKKCKME EGPVKPKVEE TASDSSVGDR GQKQGKGKNS KPAVEPPKDY IHVRARRGQA  180
TDNHSLAERV RREKISQRMK LLQDLVPGCN KVVGKALMID EIINYVQSLQ QQVEFLSMKL  240
ATVNPQLDFS NLSTLLHKDM YQAYGPSVSS VFPLESAGVA FPFCDQADIF QFFGSGTMEN  300
QCSLGLLDTA VPHTDNTQYA FQKQRRDFWE EDLQNALHID NEQSQENGVS APHVDGSYNG  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003334G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.11e-175transcription factor BHLH089-like
TrEMBLA0A0E0B4W81e-174A0A0E0B4W8_9ORYZ; Uncharacterized protein
STRINGOGLUM09G16010.11e-175(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-59bHLH family protein