PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003045G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 355aa    MW: 38351.6 Da    PI: 8.4883
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003045G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA447.2e-141550137
        CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37
                     d+p+YVNaKQy++Il+RR +Rak+e+ ++l  k rk+
  PH01003045G0040 15 DAPIYVNAKQYEGILRRRRARAKAERGNRL-VKVRKE 50
                     68***************************9.888886 PP
2CBFB_NFYA401.3e-122222453558
        CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                        pylheSRh hA+rR+RgsgGrF
  PH01003045G0040 222 AMPYLHESRHLHAVRRARGSGGRF 245
                      569********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-51366IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.4851449IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-2517245IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601939IPR018362CCAAT-binding factor, conserved site
SMARTSM005216.2E-4189248IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.92224248IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MQGGCMRIPL NMPADAPIYV NAKQYEGILR RRRARAKAER GNRLVKVRKE AGAARTRVEA  60
AALALDEASV VLLFRDKVYL QGSNPTRLCF KAVCFTVDDE CPCAWVTSFS DWLEHRCVHA  120
AGSIYWHICN SARLLALDSA TLEFSFLYGL RLRVSPPSPD PAQTEAPPAP APGPRVTYSG  180
SGLRCRSTAC SAASRVEPAR LMGPSSLVHV ALGVGDEVTA VAMPYLHESR HLHAVRRARG  240
SGGRFLNTKK EIKGKEAGGG SKVVDSSLPM RLAASPSSEI QHSEQGNPSS VSGLSGSEVT  300
SMYEHEDVDH YHSFEHLRTH FFTPLPSILD GEHGAGNPFK WTAASDGCCD LLKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003045G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.14e-13nuclear factor Y, subunit A2