PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002789G0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 322aa MW: 34362.4 Da PI: 7.4797 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 50.8 | 4.3e-16 | 108 | 140 | 46 | 78 |
TSSEEETTT--SS--S-STTTT-------S--- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 srfh+l efDe+krsCr+rL++hn+rrrk+q+ PH01002789G0180 108 SSRFHMLAEFDEGKRSCRKRLDGHNRRRRKPQH 140 69****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.11 | 59 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-5 | 106 | 125 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.69E-13 | 107 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-8 | 109 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MAHSVHVRLS LPLSAEAHEK ADPNSSGFLV ESGEAAVPVT GVGGGGGFDE TDDAPMMTEL 60 QRVDPNSSFH LRSTPSSMLS SSVGSSMRRR QGPQRASGGR RPLRVEASSR FHMLAEFDEG 120 KRSCRKRLDG HNRRRRKPQH DAMNPMSFFP YHQVNQFSVH RQTFPIADQN ADSFMHPLDR 180 QPPFSISFSG TLKAPKHFPF LQDGSSILST ARPALLQPFS SAEDGTTTTT TTTSTCNGLS 240 HALDPECALS LLSSSLHPSP AGIPSATVPT QFASSLARIA VASQAATTAF APDGAGGGDH 300 VLVPGAMFED PSQVLPFSWQ V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 137 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002789G0180 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617950.1 | 9e-99 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 1e-100 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A3S6H5I4 | 1e-135 | A0A3S6H5I4_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | OPUNC11G11990.1 | 1e-101 | (Oryza punctata) | ||||
STRING | LPERR11G11330.1 | 1e-101 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-14 | SBP family protein |