PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002763G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 316aa    MW: 33987.2 Da    PI: 9.4753
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002763G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK67.42.2e-212872448
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                     ++s e++sk Fslpi++AA+ Lgvc++vLKr CR +GI RWP+Rk
  PH01002763G0330 28 SLSYEEISKLFSLPIAEAASILGVCTSVLKRLCRTHGIVRWPYRK 72
                     6899****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.0851297IPR003035RWP-RK domain
PfamPF020421.1E-192972IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASNAQAQPP VQQQAAAAAP QPKSTRVSLS YEEISKLFSL PIAEAASILG VCTSVLKRLC  60
RTHGIVRWPY RKGSTAHLLS EGLDVGSSRL GSGVVTRPSG AFQGVAKSQQ GSSKAGQVSP  120
PGKQNAPSGL PISAQASQTK GIPTYMDDFK YGFPPSGLSS ENMKWWGTSS HRDSTPAKDE  180
RREAPKSTHD ASKGVTDDDE LDWGADEAES EADSVVTTEP SAQLCSLRRK AVDDGRKLLN  240
GDARRGQEFC RLHKRQKMVL AQLARAIVGI TRPKPFSPLF GQNAVLLWHR GQERLPLADC  300
SFTRVRDVPE ILEGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002763G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643988.11e-113PREDICTED: protein NLP2-like
TrEMBLA0A0E0JGB61e-112A0A0E0JGB6_ORYPU; Uncharacterized protein
STRINGOPUNC01G09100.11e-113(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.23e-09Nin-like family protein