PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002657G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17002.4 Da PI: 9.6714 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 45 | 84 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +I++L+ PH01002657G0020 45 KRNQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIRHLH 84 6788999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.842 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-9 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-6 | 45 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MTGDGSNFRG TKRTKKTATA TSEGPHHRLQ CSAKPINQPM KAPCKRNQKL GDKITALQQL 60 VSPYGKTDTA SVLHEAATCI RHLHEQIQIL TAPYPGISSS ASQQDTGDEE GVTDLRRRGL 120 CLAPLSPAIV NLVSETALLL QIYKARSYAY LSHTVY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002657G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792107.1 | 4e-64 | uncharacterized protein LOC112873346 | ||||
Swissprot | Q9SFZ3 | 3e-23 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A3L6TN37 | 8e-64 | A0A3L6TN37_PANMI; Uncharacterized protein | ||||
STRING | Si039675m | 6e-64 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 4e-25 | bHLH family protein |
Publications ? help Back to Top | |||
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