PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002260G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 390aa    MW: 40402.1 Da    PI: 6.7059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002260G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10223270455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + v+Y++sLq
  PH01002260G0190 223 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIVNYVQSLQ 270
                      8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-11217274No hitNo description
SuperFamilySSF474594.58E-17217288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17219287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7223270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-10225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MANEHFFPGE YFPSGLAAPF LGSSYAPPPG PGLDVAAAMS ALGMPWADHQ LPTAESSAAP  60
AHFDSALSSL VSSPANATAG GVGDDDAFRG YAGAALESGR LSRVSSSKSL VGGAPAATAL  120
ESYGADMSPK MAGNPTLPDP PAKGAGAGCE GPARKRKASA KGKAKETSSS LPVTAATNAS  180
PKRSKVAANG DKGGEDDAGA DEKPEPPKDY IHVRARRGQA TDSHSLAERV RRERISERMK  240
MLQSLVPGCN KITGKALMLD EIVNYVQSLQ RQVEFLSMKL ATMNPRLDFD GHYLPPKDMN  300
QTAMPAYPTD DPATAFSYTG SPADPFAIAA AHHGLEACNS FQPGGGAFSW EQDLQSIVHM  360
GAASHSHGQD QQAAAPALPL PHPHGFYGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002260G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581118.11e-136transcription factor bHLH78 isoform X2
TrEMBLA0A0Q3GMZ31e-134A0A0Q3GMZ3_BRADI; Uncharacterized protein
STRINGMLOC_66841.11e-128(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-49bHLH family protein