PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001962G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 541aa    MW: 59137.3 Da    PI: 7.0178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001962G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11145170227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C f++ + tCkyGd CkF H++
  PH01001962G0090 145 GEKDCAFYMMNRTCKYGDACKFDHPQ 170
                      7889********************97 PP
2zf-CCCH28.52.6e-09195220227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + + C++f++t  Ck+G +CkF+H++
  PH01001962G0090 195 GKPDCPYFMKTSKCKFGYKCKFNHPK 220
                      7899********************96 PP
3zf-CCCH41.32.5e-13249273327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++lC+f+a+tG Ck+G++CkF+H++
  PH01001962G0090 249 EPLCSFYAKTGKCKFGANCKFNHPK 273
                      79*********************96 PP
4zf-CCCH35.41.8e-11327351226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C+f+++tG CkyG +C+F+H+
  PH01001962G0090 327 GEVDCPFYMKTGSCKYGYTCRFNHP 351
                      5789********************9 PP
5zf-CCCH30.65.8e-10438456826
                      GGGGTS--TTTTT-SS-SS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                      f+++tG+Ck+ +rCkF+H+
  PH01001962G0090 438 FYMKTGFCKFSERCKFHHP 456
                      9*****************9 PP
6zf-CCCH26.61e-08489512427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      e C f+++tGtC++G  Ck  H+p
  PH01001962G0090 489 EVCAFYMKTGTCRFGVHCKLDHPP 512
                      78*****************88885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432143171IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5144170IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558193221IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4193220IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7195220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4199220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.38246274IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7246273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6248273IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10249273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6251272IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07325353IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9327351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5329353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.108435458IPR000571Zinc finger, CCCH-type
SMARTSM003560.29435457IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7437456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4438456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638485513IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5485512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-5487514IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6489512IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSNPYYAYGR DGAGDNAAAG YSSYEIDLIA ARYAGDPLPY PSAAGAFDAQ VSARRSAEGE  60
SSPCPVQLIG VILLRLLDNA TDFCRIHECV AYKVLFFIST IVLYHQSIMG SHSTVGQSEA  120
LYSSNTMVKR PRLESSLPIY PQRPGEKDCA FYMMNRTCKY GDACKFDHPQ WVPEGGIPNW  180
KEVPNLEESY PERPGKPDCP YFMKTSKCKF GYKCKFNHPK EKVNASVAGT GDEESLTADS  240
SILPVRPSEP LCSFYAKTGK CKFGANCKFN HPKDIEIPPS GKESKNIATV EAAGHTGAAD  300
DPVSAKMFAP VATAQEHNSK GLPIRSGEVD CPFYMKTGSC KYGYTCRFNH PDRHCQVLNF  360
PLVASLGQSI LPTAAAAVPA AVLNPAANFL QSFDFHAAHV PIEPEPMTYP QRPGETVCDV  420
CYITVALPIA VLDVLYPFYM KTGFCKFSER CKFHHPVDRS APDTVVPWEP TQQAVTLTLA  480
GLPRREDAEV CAFYMKTGTC RFGVHCKLDH PPPEEAIAKV SKQGAEREGE RKGAGLSDLL  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001962G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569363.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
STRINGLPERR01G19520.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-140floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]