PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001784G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 291aa    MW: 31573.8 Da    PI: 6.9764
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001784G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.6e-304106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+++p++      ++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q
  PH01001784G0250   4 SCNGCRVLRKGCSDDCAIRPCLqwirsTDAQANATVFLAKFYGRAGLLNLITAGPDHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQ 97 
                      6*********************9998777889************************************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e +l++
  PH01001784G0250  98 SAVESVLRG 106
                      **9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381555.8E-891269IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.3223109IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCA IRPCLQWIRS TDAQANATVF LAKFYGRAGL LNLITAGPDH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPASTAVP  120
PLRTCDIRHV AERGDHRGIP ADLQRLGNRS REQFKRPGAH KSSGCESALE LVFAQPSAAM  180
DVDVRQAQPL NWVRRELSHG SGSHDAVPES DHSNTSVDTV EGSHDSQSEA PEPRTTEMRE  240
AGLDLTLGLL PRVHKTEPAN DGQVDKGEPV ELGLAISASI NIMKSLDIVV I
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001784G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005020.0FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.11e-145PREDICTED: LOB domain-containing protein 40
TrEMBLJ3KW271e-144J3KW27_ORYBR; Uncharacterized protein
STRINGOB01G11830.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-72LOB domain-containing protein 41