PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001739G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 444aa    MW: 48352.2 Da    PI: 6.5728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001739G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.31.8e-125514391374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      l++lLl+cA a ++g l +a+a+L+++  l+spdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l++
  PH01001739G0180  51 LIHLLLNCAAAAAAGRLDAANAALEHIASLSSPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAAP--TPAEVVAARRHFLDLCPFLRL 142
                      689************************************************************95444444..6899999************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +  +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T++++    +k+ l++t+  L+k Ae+l+vpf+fn+ v++rl+
  PH01001739G0180 143 AGAAANQSILEAMESEKIVHVIDLGGADAIQWLELLHLLAARPEGPPHLRLTAIHE----HKDVLSQTAMVLTKEAERLDVPFQFNP-VVSRLD 231
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                      +l++e+Lrvk+gEala+++++qlh ll                     +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+ea
  PH01001739G0180 232 ALDVESLRVKTGEALAISSIVQLHCLLasdddsaaaaaggdkdrrspeSGLSPSTSRADAFLGALWGLSPKVMVVTEQEASHNAPGLTERFVEA 325
                      *******************************************9997522233344789*********************************** PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      l+yy+alfd+le++++r s er+ vEr llg+ei+n+vac gaerrerhe+le+W +r+e aGF+ vpls++a  qa+++ +  + d ++v ee
  PH01001739G0180 326 LNYYAALFDCLEVGAARGSVERARVERWLLGEEIKNIVACDGAERRERHERLERWARRMEGAGFGRVPLSYYALLQARRVAQGLGCDAFKVREE 419
                      *************************************************************************************999****** PP

             GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                      +g ++l+W+dr+L+svSaWr
  PH01001739G0180 420 KGIFFLCWQDRALFSVSAWR 439
                      *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.90525419IPR005202Transcription factor GRAS
PfamPF035146.1E-12351439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVHDEGSSSS VTSSPLQNFS NMPLHPTAAA ASQTPPWMLR ELRSDERGLC LIHLLLNCAA  60
AAAAGRLDAA NAALEHIASL SSPDGDAMQR VAAAFAEALA RRALRAWPGL CRALLLPRAA  120
PTPAEVVAAR RHFLDLCPFL RLAGAAANQS ILEAMESEKI VHVIDLGGAD AIQWLELLHL  180
LAARPEGPPH LRLTAIHEHK DVLSQTAMVL TKEAERLDVP FQFNPVVSRL DALDVESLRV  240
KTGEALAISS IVQLHCLLAS DDDSAAAAAG GDKDRRSPES GLSPSTSRAD AFLGALWGLS  300
PKVMVVTEQE ASHNAPGLTE RFVEALNYYA ALFDCLEVGA ARGSVERARV ERWLLGEEIK  360
NIVACDGAER RERHERLERW ARRMEGAGFG RVPLSYYALL QARRVAQGLG CDAFKVREEK  420
GIFFLCWQDR ALFSVSAWRG RRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-64354412380Protein SCARECROW
5b3h_D5e-64354412380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001739G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975350.0FP097535.1 Phyllostachys edulis cDNA clone: bphylf044j19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-174SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3B6EPZ70.0A0A3B6EPZ7_WHEAT; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-123scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]