PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001550G0050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 300aa MW: 32209.1 Da PI: 9.1079 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 131 | 185 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PH01001550G0050 131 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 185 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.8 | 2.2e-41 | 131 | 221 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PH01001550G0050 131 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 221 69*************************************************************************************9.665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 114 | 181 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-18 | 116 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 127 | 187 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-16 | 129 | 191 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-15 | 131 | 185 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.46E-16 | 131 | 188 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 162 | 185 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.1E-25 | 187 | 230 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.1E-11 | 187 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MELGLSLGEA DAVRPELVLG LGVGVGAGRG EEGERGRREA AVGARRWAAA ASPEPSGVRR 60 RRRAAGMENE EDQQGDPAAV TLSSSPNDSA GSFPLDLSAH SRRRPAEVAT QAGGERSSSR 120 ASDDDEGASA RKKLRLSKEQ SAFLEESFKE HSTLNPKQKV ALAKQLNLRP RQVEVWFQNR 180 RARTKLKQTE VDCEYLKRCC ETLTEENRRL HKELAELRAL KTAHPFYMHL PATTLSMCPS 240 CERIASNPAT ASTSTPAAAA SNTGVAAPEN RPSSFAALFA APRSFPPAAQ PQLPASNCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 187 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001550G0050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095896 | 0.0 | FP095896.1 Phyllostachys edulis cDNA clone: bphylf048g10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702116.1 | 1e-117 | homeobox-leucine zipper protein HOX27 | ||||
Swissprot | A2YW03 | 1e-110 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A0D9X8P6 | 1e-125 | A0A0D9X8P6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G14440.1 | 1e-126 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-69 | homeobox from Arabidopsis thaliana |