PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001453G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 354aa    MW: 38544.4 Da    PI: 9.5654
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001453G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.53.4e-31169225158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+e+e+kl  k rkpylheSRh+hA+rR+RgsgGrF
  PH01001453G0250 169 DAPIYVNAKQYEGILRRRRARAKVERENKL-VKDRKPYLHESRHRHAMRRARGSGGRF 225
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.7E-35167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.026168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-28171225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-24171193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-24202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMSFKSHEGF GQVAAVRQAS NSGVGAPVPW WAGSQLVYGE PAALSPEETR RDGQFQIVPR  60
AQGFLDPAPP AKAGQLVPKR GAPEVLKFSV FQGNLESGGK GENNSEHSST IALQSPFPEY  120
NSRFELGLGQ SIVSSNYPCA DQCYGLLTTY AMKSMSGGRM LLPLNTPADA PIYVNAKQYE  180
GILRRRRARA KVERENKLVK DRKPYLHESR HRHAMRRARG SGGRFLNTKN EGNGKDTLGG  240
SKKADCTPPA QLATSPSSDI RHSELGNPHS RSSVSSLSGS EVSSMYDHED ADHYNSIEHL  300
RTPFFTPLPI IMDGEHGAAT PFKWATAADG CCKSFLALLH RGAFHITYLF LKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19169231264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209218RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001453G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561845.11e-172nuclear transcription factor Y subunit A-10
TrEMBLI1GQ011e-171I1GQ01_BRADI; Uncharacterized protein
STRINGBRADI1G13680.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-28nuclear factor Y, subunit A10