PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001400G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 412aa    MW: 44010.6 Da    PI: 4.9363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001400G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12225270555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A  Y+k L+
  PH01001400G0040 225 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLMNAASYLKTLE 270
                      7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17219286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-12225274No hitNo description
PfamPF000101.2E-9225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MANDIAGLEG TLADPFWPAF TDCAASFIAN DANAFFGVAD VDHMVSTNKV EDMVDMDASG  60
FLGGEDDQLV LQHEPMLSSK RTLSIDSGGS SASVTLDAAL AAAATNVISQ YPSPAPPVAC  120
HPFAGRDHDD TAIMRAMMAV ISSSSASPSS SSSASASSPP PFSRDSMQQA AMPQPRGGNG  180
HMMVRSSLAT QPEKTASLST SGGDGRGQQQ EEPITASGNS SQLYHMMSER KRREKLNDSF  240
HTLRSLLPPC SKKDKTTVLM NAASYLKTLE AQISELEEKN TKLEKHIPCE DGGRSDAMRA  300
RAARQRAKVQ ISKASSDRQG SELVNLTVMV MVECDIVDLV LRILECLRWM KEISVLSVDA  360
DTYSPQVLLK SIASIKLQIM DGDWNEASFH EAMTKAVNDA TSSCVPLVLT A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERKRRE
2229234RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001400G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.11e-135putative transcription factor bHLH041
TrEMBLA0A077S0G31e-140A0A077S0G3_WHEAT; Uncharacterized protein
STRINGTraes_3B_AC3752E39.11e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-27bHLH family protein