PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001393G0410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 27547.8 Da PI: 5.1295 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.8e-17 | 16 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W++eEde+l++ + ++G g W+ Ia++++ gRt++++k++w++ PH01001393G0410 16 KGLWSPEEDEKLYNHIIRYGVG-WSQIASHLP-GRTDNEIKNFWNSC 60 678*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.44E-16 | 10 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.373 | 11 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 11 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 15 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 16 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-14 | 19 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRHACTGGV QQKLRKGLWS PEEDEKLYNH IIRYGVGWSQ IASHLPGRTD NEIKNFWNSC 60 LKKKLRQRGI DPSTHKPISA AAAAAALDPT SLDQKSPLDV TDDCFWMKAL QDQKSPLVVT 120 AGCCGMKFDP FPVTDGLVLY GHLGGEDAAG FVDYGSVLDV SENLGYGESS SNSSNWNCAV 180 GAPEVKNVLQ GGEALHWTSE SKVEPFVGYG GEGEALEHKF VLPCHGQQEP SMPHFDFDVG 240 RGAVVGEFNL EYF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 66 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001393G0410 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961618 | 4e-57 | EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644576.1 | 1e-113 | PREDICTED: myb-related protein Hv33-like | ||||
Swissprot | P20027 | 3e-45 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | J3L3A0 | 1e-112 | J3L3A0_ORYBR; Uncharacterized protein | ||||
STRING | OB01G37060.1 | 1e-113 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-29 | myb domain protein 86 |