PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001385G0300

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 543aa MW: 59131 Da PI: 4.8153

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001385G0300	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	160	219	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr++k+s PH01001385G0300 160 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRRSKNS 219 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	146	217	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	162	218	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	164	218	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	166	202	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MSDQKDPGIK LFGLVIPVVP EAAPGPPEAE ATAGPEQSPP PQLELQPPAP ADAEPEADKD 60 QHKETEDKED NEMKVDVPQE KEDSKMKVDA PLEKEDNEMK VDAPQAKENA EPDSSSTSDR 120 KKEDQDQIGN AQDKAASDPK EENEKTANDE SGQDKVLKKP DKILPCPRCN SMDTKFCYYN 180 NYNVNQPRHF CKKCQRYWTA GGTMRNVPVG AGRRRSKNSS LHYRHLLMAP DCLMGSRVDV 240 SKTVIPEALA SSPSIPIQPI SRNETVLKFG PEVPLCESMA SVLNIEEQNV TNAGSVPMIE 300 SREDNSCASS ITSYNGLPEN AVHTDKIGTP VYYNGVGPVP QYYLGAPFMY PWSIGWNNLP 360 VMVPGRGMSE SASPSESCST SSAPWMNSTM MPTSQLSAPA FPYPLVPPAL WGCLPSWPAT 420 TWNMPWIRTN GCISPSSSSN SSCSGNGSPT LGKHSRDSNP LKEENEEKSL WVPKTLRIDD 480 PDEAAKSSIW ATLGIKPGDP GIFKPFQSKG ESKCQTSDAH PARVLQANPA ARSRSQSFQE 540 IS*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MSDQKDPGIK LFGLVIPVVP EAAPGPPEAE ATAGPEQSPP PQLELQPPAP ADAEPEADKD  60
QHKETEDKED NEMKVDVPQE KEDSKMKVDA PLEKEDNEMK VDAPQAKENA EPDSSSTSDR  120
KKEDQDQIGN AQDKAASDPK EENEKTANDE SGQDKVLKKP DKILPCPRCN SMDTKFCYYN  180
NYNVNQPRHF CKKCQRYWTA GGTMRNVPVG AGRRRSKNSS LHYRHLLMAP DCLMGSRVDV  240
SKTVIPEALA SSPSIPIQPI SRNETVLKFG PEVPLCESMA SVLNIEEQNV TNAGSVPMIE  300
SREDNSCASS ITSYNGLPEN AVHTDKIGTP VYYNGVGPVP QYYLGAPFMY PWSIGWNNLP  360
VMVPGRGMSE SASPSESCST SSAPWMNSTM MPTSQLSAPA FPYPLVPPAL WGCLPSWPAT  420
TWNMPWIRTN GCISPSSSSN SSCSGNGSPT LGKHSRDSNP LKEENEEKSL WVPKTLRIDD  480
PDEAAKSSIW ATLGIKPGDP GIFKPFQSKG ESKCQTSDAH PARVLQANPA ARSRSQSFQE  540
IS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001385G0300

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565622.2	0.0	cyclic dof factor 2
TrEMBL	A0A0D9UZC0	0.0	A0A0D9UZC0_9ORYZ; Uncharacterized protein
STRING	LPERR01G09720.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-68	cycling DOF factor 2