PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001302G0050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26451.2 Da PI: 8.3517 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 89 | 134 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f Lr +P+ +++Ka+ L Av YI +L PH01001302G0050 89 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYIAEL 134 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.275 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-16 | 88 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 89 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.01E-12 | 89 | 135 | No hit | No description |
Pfam | PF00010 | 9.5E-11 | 89 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-11 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MDEQLISLSS SSSTHYPAAS FSAAAGHPVL EFMSCDVPEQ WLLADDSAWA VGSSLSPGSH 60 MLLQGNAPPL TAKRRGRKPG PRSYGPTISH VEAERQRRDK LNRRFCDLRA AVPTVSRMDK 120 ASLLADAVAY IAELRGRAER LEAEAKQAAA ARNVPSGTAT AAEAFGLEEK LEVRMVGREA 180 AAVRLTTAAL HAPARLMGAL RALDLPLQHA CVSRVGAVTV QDAVVDVPAA LQVEGCLRAA 240 LFHRLQES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_B | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_E | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_F | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_G | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_I | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_M | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
5gnj_N | 4e-19 | 88 | 147 | 7 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001302G0050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP097341 | 0.0 | FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444643.1 | 1e-100 | transcription factor bHLH14 | ||||
TrEMBL | A0A1B6PIG0 | 3e-99 | A0A1B6PIG0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g025310.1 | 1e-100 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-27 | bHLH family protein |