PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001264G0440

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 480aa MW: 51417.6 Da PI: 7.5808

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001264G0440	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	145	203	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk+ PH01001264G0440 145 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKN 203 7899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	138	202	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-32	147	203	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	149	203	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	151	187	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MGECKGGGDC LIKLFGKTIP VPESGDVAKC SSIGKEFECL EGVIFESESC GILIQAKKAP 60 NLHLFINNYS NSVNSRGDFS ESFQDLQHSG SCSTEFNTQE NTRQDNADPS PQPEVVDAED 120 PATADKSSPP QSGDAANQKE KLKKPDKILP CPRCNSMDTK FCYFNNYNVN QPRHFCKNCQ 180 RYWTAGGAMR NVPVGAGRRK NKNAFAVSHF LQGVRAALPG DQLCGPPVKT NGTVLSFGHD 240 ASALGLAEQM THLKEKLIPI GGRAGNTGDN PSVGSCSEVS SNRDDKNQSN SNEKVTVEKY 300 ANGAPHPSMN GGTMWPYSCA PSPAYYTSGI AIPIYPAAPA YWGCMVPGAW SLPWPIQSQS 360 QALSSPTSAP SVSSGPNCLT LGKHPRESDE GRVQGNGKVW VPKTIRIDNA DEVARSSIWS 420 LIGINGDKEE TETGGHKHAT VFEPKREAKM AKRAVITSLP LLHANPVALT RSATFQEGS*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MGECKGGGDC LIKLFGKTIP VPESGDVAKC SSIGKEFECL EGVIFESESC GILIQAKKAP  60
NLHLFINNYS NSVNSRGDFS ESFQDLQHSG SCSTEFNTQE NTRQDNADPS PQPEVVDAED  120
PATADKSSPP QSGDAANQKE KLKKPDKILP CPRCNSMDTK FCYFNNYNVN QPRHFCKNCQ  180
RYWTAGGAMR NVPVGAGRRK NKNAFAVSHF LQGVRAALPG DQLCGPPVKT NGTVLSFGHD  240
ASALGLAEQM THLKEKLIPI GGRAGNTGDN PSVGSCSEVS SNRDDKNQSN SNEKVTVEKY  300
ANGAPHPSMN GGTMWPYSCA PSPAYYTSGI AIPIYPAAPA YWGCMVPGAW SLPWPIQSQS  360
QALSSPTSAP SVSSGPNCLT LGKHPRESDE GRVQGNGKVW VPKTIRIDNA DEVARSSIWS  420
LIGINGDKEE TETGGHKHAT VFEPKREAKM AKRAVITSLP LLHANPVALT RSATFQEGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001264G0440

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	3e-87	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-180	cyclic dof factor 1
TrEMBL	A0A1D8F0I7	0.0	A0A1D8F0I7_9POAL; Dof protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-63	cycling DOF factor 2