PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001225G0350

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 450aa MW: 48734.2 Da PI: 5.7942

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001225G0350	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.5e-13	148	188	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT +E +ll+++++++ + W+ Ia+++g ++t qc++++ PH01001225G0350 148 SWTDQETLLLLEGIEKYNDN-WNDIAEHVG-TKTKAQCIHHFI 188 7**************977.*****.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	22.858	144	195	IPR017884	SANT domain
SMART	SM00717	3.7E-12	145	193	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.96E-13	146	194	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-8	147	187	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-10	148	190	No hit	No description
Pfam	PF00249	1.1E-12	148	189	IPR001005	SANT/Myb domain
Pfam	PF16495	3.9E-25	248	321	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MAASLIREEP TGELQLLSAP LKSIDGLILF DRPKCSVRAE DIVSVASTAF APEVANGDAG 60 FADLDEKIWE RLSDNFCSYC SQPLLSLHYE SQKEKLVKVV LTSWLIEQAD IALCSDCFNY 120 ARFVTGHSSL DFQRVDGKKD GSDNDGDSWT DQETLLLLEG IEKYNDNWND IAEHVGTKTK 180 AQCIHHFIRL PVEDGLLESI EVAFLASAVG PRVAASCANA ALAFLTRDDS RMCSEGNDVV 240 GHASCPNSAA ATKCKLFADQ EEREIQRLTA TIINHQLKRL ELKLKQFAEV ETLLLKESEQ 300 VERIRQGLSA QRVRMMSARL ASTGGTLPGG SSTMASNPMN QANPRPPGMP SSMPPASMPA 360 LYANNMQGHP AQMAFLQQQQ RQQMLAFGPR LPLSAIHPGS TSSAPNAIFN PGSTSSAPNV 420 VFNPGMPNSA TPNHHPMMRP PSGKNSSLG*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MAASLIREEP TGELQLLSAP LKSIDGLILF DRPKCSVRAE DIVSVASTAF APEVANGDAG  60
FADLDEKIWE RLSDNFCSYC SQPLLSLHYE SQKEKLVKVV LTSWLIEQAD IALCSDCFNY  120
ARFVTGHSSL DFQRVDGKKD GSDNDGDSWT DQETLLLLEG IEKYNDNWND IAEHVGTKTK  180
AQCIHHFIRL PVEDGLLESI EVAFLASAVG PRVAASCANA ALAFLTRDDS RMCSEGNDVV  240
GHASCPNSAA ATKCKLFADQ EEREIQRLTA TIINHQLKRL ELKLKQFAEV ETLLLKESEQ  300
VERIRQGLSA QRVRMMSARL ASTGGTLPGG SSTMASNPMN QANPRPPGMP SSMPPASMPA  360
LYANNMQGHP AQMAFLQQQQ RQQMLAFGPR LPLSAIHPGS TSSAPNAIFN PGSTSSAPNV  420
VFNPGMPNSA TPNHHPMMRP PSGKNSSLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269\|PubMed:14682613, ECO:0000269\|PubMed:16055636}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001225G0350

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362277	1e-122	AK362277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003O22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578845.1	0.0	SWI/SNF complex subunit SWI3C
Swissprot	Q9XI07	1e-107	SWI3C_ARATH; SWI/SNF complex subunit SWI3C
TrEMBL	A0A0Q3HUS3	0.0	A0A0Q3HUS3_BRADI; Uncharacterized protein
STRING	BRADI4G41230.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2692	4	7

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Archacki R, et al. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta, 2009. 229(6): p. 1281-92 [PMID:19301030] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427]