PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001167G0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 178aa MW: 18837.2 Da PI: 8.335 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71 | 2.2e-22 | 76 | 122 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v+gC++dls+++eyhrrhkvCe+hsk+pvv++ g+eqrfCqqCs PH01001167G0360 76 CSVDGCRSDLSQCREYHRRHKVCEAHSKTPVVVIGGQEQRFCQQCSS 122 *********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.3E-23 | 70 | 122 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.272 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.12E-21 | 75 | 127 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-17 | 76 | 126 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MDWAAASKAP SWGTTAAAAD SGPTMLSFAG PSSSSSSAAA AELQDFSVGI AQRARPAPAT 60 ARRARAPGGG GGAEACSVDG CRSDLSQCRE YHRRHKVCEA HSKTPVVVIG GQEQRFCQQC 120 SSKSTVKVHN PRDLEAQRSK LCPFDCTMIE SYNEKTKNNM HCLISTLVSE VSEIFLK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 8e-16 | 71 | 121 | 1 | 51 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001167G0360 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352598.1 | 2e-48 | SBP-transcription factor 3 | ||||
Refseq | XP_008677048.1 | 4e-48 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1 | ||||
Refseq | XP_008677050.1 | 2e-48 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2 | ||||
TrEMBL | A0A3S6H5I4 | 2e-50 | A0A3S6H5I4_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | Pavir.J12729.1.p | 1e-49 | (Panicum virgatum) | ||||
STRING | GRMZM2G106798_P01 | 6e-48 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-20 | SBP family protein |