PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001159G0170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 428aa MW: 45531 Da PI: 6.0662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001159G0170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	256	304	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PH01001159G0170 256 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 304 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-17	251	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-11	251	308	No hit	No description
PROSITE profile	PS50888	15.65	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	254	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-7	256	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MDMNERNEKG MDSNASSAPG NGIPVEWQSQ FSSAFSCPPA QQPPMLDSFA ASGLWASTAS 60 QNMALSDVNA MSAARGAGFL APVPGFLPQG LGHFPVDSGF IELAARSSCF VSDGMMGAGA 120 FGAADQPMSN AFSGASEGLL DHRRKDDNEK AEPELSGNGH EEMPGSEAAG GRCSSKGSDS 180 KKRRRPSEVM GADQVQSSNL PSDSANESVH SKDKGEESSP ATATTGKLKG KGAKETSESQ 240 KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV 300 QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KELLRFPGVP PSSIGFSPEM MHPQLQLSQP 360 GLIQGGGTGM ANPDVFRRII QAQLSAKDGS LMPHTLNGSF SDVTQMAYPS LGTQDLSIRP 420 SHDGFQM*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MDMNERNEKG MDSNASSAPG NGIPVEWQSQ FSSAFSCPPA QQPPMLDSFA ASGLWASTAS  60
QNMALSDVNA MSAARGAGFL APVPGFLPQG LGHFPVDSGF IELAARSSCF VSDGMMGAGA  120
FGAADQPMSN AFSGASEGLL DHRRKDDNEK AEPELSGNGH EEMPGSEAAG GRCSSKGSDS  180
KKRRRPSEVM GADQVQSSNL PSDSANESVH SKDKGEESSP ATATTGKLKG KGAKETSESQ  240
KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV  300
QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KELLRFPGVP PSSIGFSPEM MHPQLQLSQP  360
GLIQGGGTGM ANPDVFRRII QAQLSAKDGS LMPHTLNGSF SDVTQMAYPS LGTQDLSIRP  420
SHDGFQM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001159G0170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696518.1	0.0	PREDICTED: transcription factor bHLH49
TrEMBL	Q69JJ6	0.0	Q69JJ6_ORYSJ; BHLH-transcription factor
STRING	OS09T0474100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-55	bHLH family protein