PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001075G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 673aa    MW: 75734.7 Da    PI: 5.0404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001075G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-077295327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C +f++ G C  GdrC+F Hgp
  PH01001075G0590 72 MVPCYYFQK-GNCMKGDRCPFYHGP 95
                     789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.1836996IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-66995IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-57094IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-47195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-57396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEADGTAAAV ASAGARPLTP EEEALRRNTD CVYFLASPLT CKKPIDGMFG SPTPGIPAIS  60
SHYAAYNSGK QMVPCYYFQK GNCMKGDRCP FYHGPQSVGN NPPEQVANVS SFPLEQPQTQ  120
KNDLLGIKES VQPNNLIQQG GPIINDRSKL TVDWLATNSA KTAAAVTPAE PVSNAVKSWA  180
KSEKVQNSMP AVKKSFITSS GEDHPECYQN HPPVESDPMQ DWNQNYQMPP TDDLPQNSRE  240
ADEFLGESSP GFDVLVDNDA DAAAYLHAEE DFGRDMYPVE DYEYAPADFD IRAHHERERF  300
NGMGEQGQIG QMYDGYERKR RRTSSERNMD RPFHSERRFL HGVIDPVEMD GSDLRHRLRR  360
RRINGPSSAI SPERNGERLR RDEHYRERAH GGRDTHRDRH LGPRGSTLNS RLQGRIKLPG  420
RSPDRVDIRS EKERDRRRLR DKLSPVRRMD FQGGRHREAG QHEERTRRRS SELASSARNA  480
DGQHSRRDVM DSLYFATRKN FGESRKGNGI VESEASLDFE GPKPLSVILQ RKREAAWGNG  540
SSAHNVKEDK SAEVSQGRSD SLVEAEKEVF DNIFSSEECK SGSGDEEYKE EGQIPVEGRG  600
QSSSHGDKLE VEDIIEVDPV GNQEADDYDQ RESDYEAIEG HDYKSEDENA YQDDEEEFED  660
DDFARKVGVV FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317321RKRRR
2317322RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001075G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580797.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2K2CJA20.0A0A2K2CJA2_BRADI; Uncharacterized protein
STRINGBRADI5G25760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]