PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001070G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 275aa    MW: 29426.6 Da    PI: 6.1367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001070G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.24e-1963106343
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae 43 
                      Dgy+WrKYGqK+++g+++pr+YYrC  +   gCp+k+ v+r+++
  PH01001070G0190  63 DGYQWRKYGQKQIEGTKYPRGYYRCNNStrqGCPAKRTVQRDDD 106
                      9************************665556**********984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-2250130IPR003657WRKY domain
SuperFamilySSF1182908.76E-2054130IPR003657WRKY domain
SMARTSM007747.1E-2661130IPR003657WRKY domain
PROSITE profilePS5081119.17563104IPR003657WRKY domain
PfamPF031063.9E-2263129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPEAPVASGG RRRRRGGKRA REKSNDEVIG GANANCSESA SSRKKPETTR TTRTLVTTVP  60
DFDGYQWRKY GQKQIEGTKY PRGYYRCNNS TRQGCPAKRT VQRDDDVGMN GDGGPPKYTV  120
VYIAEHICKT TESVAPVILE TTVRTKKPAA DNDAAAQVLL PAPDDVVVPA DSTTIGSSTA  180
TAAAAATTTT ATNTGTEPPA ISSDITWSSD ANSSDHDYYP RVDGLFAVDD WHPTPAAAAL  240
VQEMDFNGPI RSPVHIPADG WIDDLLVNQS LLIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-14631291069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001070G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196414.14e-58WRKY transcription factor 22-like
TrEMBLA0A0A9HC423e-59A0A0A9HC42_ARUDO; Uncharacterized protein
STRINGEMT186211e-57(Aegilops tauschii)
STRINGTraes_5DL_09F1F8F79.11e-57(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-16WRKY DNA-binding protein 62