PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001067G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 387aa    MW: 40671 Da    PI: 9.7414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001067G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-053223591254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  PH01001067G0210 322 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 359
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-11320377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-5320363No hitNo description
Gene3DG3DSA:4.10.280.102.2E-8324367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MADHQEMIHA AAASAALYRG ATRSSNTQAS HGGDWWSTAV APPVSSCSPE MPGFGTWSAA  60
AAAGGHVDGV DGNRSRSSNT ASSESPGSNS LATGSSITFQ EPTSVADPAT ITVPQTAAAG  120
FATGWSQPFL DGSGFHGYMS SRSDQNHINT PSLMSPTPSS SNNNTMLQGS HDQNYQFLSN  180
LGFELLSSPT SPYGGFRSSL MRSLTEPAVS AAAAKPNSPG FQQYQQTMNE APEASIRQPL  240
QFTNNTPFWN PSTGFATAVD GAALGAARPP PVRTRPSSFA AKSALGVGDS SSVITKKANA  300
DPTPLRKART GTPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH ETIEYIKFLH  360
EQVGAHSAPY LKNRPQQVPH LKVRQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001067G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612832e-57BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821266.11e-154transcription factor bHLH112-like isoform X1
TrEMBLA0A3L6PM301e-154A0A3L6PM30_PANMI; Uncharacterized protein
STRINGPavir.Fa02016.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.21e-30bHLH family protein