PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001028G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 382aa    MW: 42509.1 Da    PI: 5.9781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001028G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.44e-32741682103
                      HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw  +g  +sfvv+d++ +a  +Lp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+l
  PH01001028G0180  74 FVAKTYEMVADAATDAVVSWGPDGggSSFVVWDPHALAAGLLPRFFKHANFSSFVRQLNIYGFRKVNPDR---------WEFANEAFLAGKKHL 158
                      9********************654469****************************************999.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  PH01001028G0180 159 LKNIKRRRAS 168
                      ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-5270165IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-3470165IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3071165IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2874165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-177497IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17114126IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340115139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17127139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSSGWPLI PRQSGSKRTR TTSGGLGAVG EGAMAWEATV VEREVKPEAE WEREAAPLVP  60
RPMEGLGSAR PAPFVAKTYE MVADAATDAV VSWGPDGGGS SFVVWDPHAL AAGLLPRFFK  120
HANFSSFVRQ LNIYGFRKVN PDRWEFANEA FLAGKKHLLK NIKRRRASKH QIESKPRNGP  180
SIYFGQPVAL SEVESLKRDS AALRAEVMTL KQQYRSCKSQ LIAMEERILN NERKLQQIIT  240
FFTTVLSNPV FVQQVLLDYA KKKELGGTAK RQRLMENEEQ HVDVPLKKGM EAAFETEADV  300
SAGNSECGTV GKDESTPKRN VQSIDHICDD VWEELDAIPG TEMGQEDKAE IGFDIEELTR  360
RPCGWIDDCP YQVEPMQFVE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-216716813123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001028G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231933.11e-179heat stress transcription factor A-6a
SwissprotQ657C01e-179HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLI1NP720.0I1NP72_ORYGL; Uncharacterized protein
STRINGORGLA01G0166200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-79heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]