PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000907G0490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 230aa MW: 26248.9 Da PI: 9.7574 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.6 | 3.1e-13 | 1 | 50 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 m+++gf +sp+qC++k+++lnkryk++ + +++ +++++++++++d ++ PH01000907G0490 1 MMDKGFMVSPQQCEDKFNDLNKRYKRVVDLLGRGkACKVVENHALLDAMD 50 899*****************************9967************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.0E-9 | 1 | 46 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMDKGFMVSP QQCEDKFNDL NKRYKRVVDL LGRGKACKVV ENHALLDAMD ELTPKAKDEA 60 RKLLSSKHLF FREMMTAAGE DGPPAVQQLQ SELAAWAAGG DPQQVRQWVR RRAVELEEQQ 120 VAYECRAYQL ERQRLKWERF RANKEREMER ARLRNDRLGI DGRRMLLLLR QKDLDFDIAE 180 ANSSSVEHLP AAPLASAPAP PPPATPTRKA KQHHASWLHA NLSFPSNQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000907G0490 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110194 | 1e-117 | AB110194.1 Oryza sativa Japonica Group mRNA for hypothetical protein, partial cds, clone: 22C4AG010. | |||
GenBank | AK289028 | 1e-117 | AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence. | |||
GenBank | AP003414 | 1e-117 | AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04. | |||
GenBank | AP003921 | 1e-117 | AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04. | |||
GenBank | AP014957 | 1e-117 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880854.1 | 2e-56 | sarcoplasmic reticulum histidine-rich calcium-binding protein | ||||
TrEMBL | M0RIG5 | 4e-61 | M0RIG5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P15390_001 | 7e-62 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11944 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 1e-35 | sequence-specific DNA binding transcription factors |