PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000906G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 550aa    MW: 59019.9 Da    PI: 6.8234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000906G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29252311159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+H h+
  PH01000906G0240 252 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCLDDMSILITTYEGTHSHP 311
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-31237313IPR003657WRKY domain
SuperFamilySSF1182909.81E-27245313IPR003657WRKY domain
PROSITE profilePS5081127.496247313IPR003657WRKY domain
SMARTSM007745.2E-35252312IPR003657WRKY domain
PfamPF031068.7E-26253311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEVAVERPPL KEEKKVDAKT EIVAIGSAPP IVFESFPSTQ RDPIIKKDDK LEATKAEMGE  60
VREENERLKT LLSHIVRDYQ SLQMHFLDAV KVKEQAPDKL STPAADVMPP PAAAEDPDDL  120
VSLSLGTRPN GSTRRKSHER SASSSSGTET DHEGQPLSLG LSCARGGGCP SKSNDDRQAS  180
RPLAPVLNLN SDSCVGDSAE PDQAAARPPT KACKSSSGGG GNAGDGADDE VLQQQAKKAR  240
VSVRVKCDTP TMNDGCQWRK YGQKISKGNP CPRAYYRCTV APSCPVRKQV QRCLDDMSIL  300
ITTYEGTHSH PLPPAAAAMA STTSAAVSML MAGPTSSSHG HLPLTSAGAD LFGPTTISTA  360
TSFPTVTLDL TAPHSSLLHP SPYAAAAGYE SKALPAAWSS GMDDSTVLDQ TLAACLGPTG  420
FTLQATAIRF DRAQSCQPFN EKCEIKEKIL IFLEPYPKVE DVKKEKTSLK MTAKEEKLVD  480
TVISLMVVGL IGRKIIHDFL RHKISPLKKR THYTWMLKGD DDPTKDSSGE EVVEEKASTI  540
LKNVTMIVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20239315176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236245KKARVSVRVK
2507511KKRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000906G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980430.0FP098043.1 Phyllostachys edulis cDNA clone: bphyem204o18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.11e-147probable WRKY transcription factor 72
TrEMBLA0A287KCW41e-153A0A287KCW4_HORVV; Uncharacterized protein
STRINGMLOC_7939.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-45WRKY DNA-binding protein 72