PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000829G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 519aa    MW: 57689.7 Da    PI: 9.782
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000829G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind266.51.5e-81213341273
        GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                      mdd+ +re  r+k+ +y+        p++slk   ++++m++++erd++++ern+al+e+kaa+aerd af qrd+a+aer+ al+ r+++l a
  PH01000829G0210  21 MDDNREREnsRHKTdHYKqyhgqwmvPQNSLK--ESMKIMTLMSERDKALQERNIALAERKAAIAERDTAFIQRDAAIAERDSALMVRNSALSA 112
                      67666655579999888888888888778999..889********************************************************* PP

        GAGA_bind  84 lllvensla.salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                      l +++++    +l +g+++ s+ +++ ++qql++      +ql d+ +++re e  +alp+ ++ + + + +k k+ + +++ + + +k  k +
  PH01000829G0210 113 LHFTRENGIgAHLRPGCSTASQGTKTPHHQQLQQylhlqqQQLPDTHYNMREFEAGDALPVATSSDGTAKPRKAKRPKIGTNMQDSPSKPSKTQ 206
                      *9988776665666666555554444445554444678889999*******************9999999888887776666666655544444 PP

        GAGA_bind 171 sekskkkvkkesader.........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                      ++ +++ ++++s++ +                         +++++k  dl+ln+v++D s++P+PvCsCtG+ +qCYkWG GGWqSaCCttt+
  PH01000829G0210 207 RKIKRSGSQNPSKQVTvaksghdwgvelvgedlnkqapqqkKRRSWKVDDLGLNQVAFDGSAMPAPVCSCTGKYQQCYKWGGGGWQSACCTTTL 300
                      44444444444444336778999*****************9999************************************************** PP

        GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                      S+yPLPv +++r+aR++grKmS+++f+klL++ +
  PH01000829G0210 301 SMYPLPVLPNKRHARLGGRKMSGSVFTKLLSRQS 334
                      *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.6E-8921332IPR010409GAGA-binding transcriptional activator
PfamPF062175.7E-7021335IPR010409GAGA-binding transcriptional activator
PROSITE profilePS5176712.702172518IPR033121Peptidase family A1 domain
SuperFamilySSF506301.62E-29332440IPR021109Aspartic peptidase domain
PfamPF000265.1E-34333440IPR033121Peptidase family A1 domain
Gene3DG3DSA:2.40.70.101.8E-39334444IPR021109Aspartic peptidase domain
PRINTSPR007921.4E-7360373IPR001461Aspartic peptidase A1 family
PROSITE patternPS001410410421IPR001969Aspartic peptidase, active site
PRINTSPR007921.4E-7410421IPR001461Aspartic peptidase A1 family
PROSITE profilePS5001510.968438480IPR008139Saposin B type domain
SuperFamilySSF478625.49E-7439473IPR011001Saposin-like
PfamPF034896.3E-11441473IPR008138Saposin B type, region 2
Gene3DG3DSA:1.10.225.102.1E-7445473IPR011001Saposin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004190Molecular Functionaspartic-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MTHFESLWTG MTQHKKFKDR MDDNRERENS RHKTDHYKQY HGQWMVPQNS LKESMKIMTL  60
MSERDKALQE RNIALAERKA AIAERDTAFI QRDAAIAERD SALMVRNSAL SALHFTRENG  120
IGAHLRPGCS TASQGTKTPH HQQLQQYLHL QQQQLPDTHY NMREFEAGDA LPVATSSDGT  180
AKPRKAKRPK IGTNMQDSPS KPSKTQRKIK RSGSQNPSKQ VTVAKSGHDW GVELVGEDLN  240
KQAPQQKKRR SWKVDDLGLN QVAFDGSAMP APVCSCTGKY QQCYKWGGGG WQSACCTTTL  300
SMYPLPVLPN KRHARLGGRK MSGSVFTKLL SRQSMKELRL IAKDVFSFWL NRDPDASTGG  360
ELVFGGVDPK QYKGSHTYVP VTRKGYWQFD MGDLIIDGHS TIFCAGGYVA IVDSGTSLLA  420
GPTTIVAQVN HAIGAEGIIS TECKEVVREY GEMILDLLIA QTSPQKVCTQ IGLRVFDGAT  480
MLKPWGFWVG HLLTSITAPL QFSLDRFQLS IPSAAYDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qdm_A9e-52335478181324PROPHYTEPSIN
1qdm_B9e-52335478181324PROPHYTEPSIN
1qdm_C9e-52335478181324PROPHYTEPSIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000829G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9452061e-141EU945206.1 Zea mays clone 244546 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398067.11e-108PREDICTED: barley B recombinant-like protein D
RefseqXP_009398068.11e-108PREDICTED: barley B recombinant-like protein D
RefseqXP_009398069.11e-108PREDICTED: barley B recombinant-like protein D
RefseqXP_009398070.11e-108PREDICTED: barley B recombinant-like protein D
RefseqXP_009398071.11e-108PREDICTED: barley B recombinant-like protein D
RefseqXP_018679871.11e-108PREDICTED: barley B recombinant-like protein D
SwissprotQ5VSA88e-84BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A444E8691e-104A0A444E869_ENSVE; Uncharacterized protein (Fragment)
STRINGXP_008779916.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.12e-82basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]