PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000727G0170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 43993 Da PI: 5.3187 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.9 | 3.1e-26 | 58 | 186 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkd 89 lp+G++F+P+d+el+++ L+k ++ + +i+e+ + e vk++ + +fF+++ k+y+tg++k+r+++ + +W++tgk+ PH01000727G0170 58 LPKGVKFDPSDQELLWHLLAKYGKAGAKPH-PFINEFIPTVEEDDG----VKQDGSVSHFFHRTFKAYNTGTKKRRKINtedlaNVRWHKTGKT 146 799************888887766666444.557766444444444....45677888******************74444666899******* PP NAM 90 kevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+v++ +g++ g+kk++v+y + + k+ kt+Wvmh+y+l PH01000727G0170 147 KPVIV-DGKHLGCKKIMVLYmsTVKGGKPDKTNWVMHQYHL 186 *****.999***********6544666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-31 | 43 | 205 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.592 | 58 | 205 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-14 | 59 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MTGTSWLIDS QRIASKIKNA SGSLDPSKHK WMSNPTKECP RCNHVIDNSD VVHQWPGLPK 60 GVKFDPSDQE LLWHLLAKYG KAGAKPHPFI NEFIPTVEED DGVKQDGSVS HFFHRTFKAY 120 NTGTKKRRKI NTEDLANVRW HKTGKTKPVI VDGKHLGCKK IMVLYMSTVK GGKPDKTNWV 180 MHQYHLGTGE DEKDSEYVVS KLFFQQQFKP GEKNAQGFTA ADALETIAAE PDLPDPLLPL 240 EEHVSYSSNQ EILQNNEHNS VQENRNSEIN IEEHAVEENA VHPSSEKPED GDNPSSQDPK 300 WWEGESQFLL DSQQLAEGLA ICDEFLQSQS QTSCGSGGEP NTTKARLAVY AQLPVEDLKK 360 DLEECQKLNP SDSANLELEN TTEFGLSQIV RF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 128 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000727G0170 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP729147 | 1e-116 | KP729147.1 Stipa purpurea microsatellite ZH4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640881.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-125 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0E0E0A5 | 0.0 | A0A0E0E0A5_9ORYZ; Uncharacterized protein | ||||
STRING | OPUNC06G09830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-124 | NAC family protein |