PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000535G0790

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 370aa MW: 39535.4 Da PI: 6.6078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000535G0790	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.7e-31	174	232	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ PH01000535G0790 174 SDLWAWRKYGQKPIKGSPHPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 232 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.178	168	234	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.0E-31	171	234	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	172	234	IPR003657	WRKY domain
SMART	SM00774	2.9E-38	173	233	IPR003657	WRKY domain
Pfam	PF03106	5.9E-26	175	232	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDMEEANAAT AQGDLADVVT RANAMAAVAS TYHHQPPLPG PAAAAAAHMP PHYPSQIMIP 60 YEEERRPMSV LCGDAMMFEA PSTVDPYLSS AMAPHAGYGL PQQHQLLAVQ ISQNACCGGA 120 AAADDGDDAM RISPLTPAAH HQMMKRKNEV KKVVCIPAPP AMSGRAGGGE VIPSDLWAWR 180 KYGQKPIKGS PHPRGYYRCS SSKGCMARKQ VERSRSDPNM LVITYTAEHN HPWPMQRNVL 240 AGYARAHTHA STKNKQHKIN RTDITSSSSS SNNIHSYSAF EQNAVGGDLD GLPANMMAAA 300 GNGVGVGVGI GAVDSLGNGE GGVMYEPCNG IQPDEVFAEL EELEPDNSMN INANIYSRGV 360 SYDQWHNKF*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDMEEANAAT AQGDLADVVT RANAMAAVAS TYHHQPPLPG PAAAAAAHMP PHYPSQIMIP  60
YEEERRPMSV LCGDAMMFEA PSTVDPYLSS AMAPHAGYGL PQQHQLLAVQ ISQNACCGGA  120
AAADDGDDAM RISPLTPAAH HQMMKRKNEV KKVVCIPAPP AMSGRAGGGE VIPSDLWAWR  180
KYGQKPIKGS PHPRGYYRCS SSKGCMARKQ VERSRSDPNM LVITYTAEHN HPWPMQRNVL  240
AGYARAHTHA STKNKQHKIN RTDITSSSSS SNNIHSYSAF EQNAVGGDLD GLPANMMAAA  300
GNGVGVGVGI GAVDSLGNGE GGVMYEPCNG IQPDEVFAEL EELEPDNSMN INANIYSRGV  360
SYDQWHNKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-24	147	234	2	79	Disease resistance protein RRS1
5w3x_D	5e-24	147	234	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000535G0790

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109795	1e-122	AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980994.1	1e-116	probable WRKY transcription factor 14
Swissprot	Q9SA80	2e-54	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A1E5W4D5	1e-122	A0A1E5W4D5_9POAL; Putative WRKY transcription factor 35
STRING	Si038727m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-55	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]